Pairwise Alignments

Query, 572 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  260 bits (665), Expect = 1e-73
 Identities = 155/394 (39%), Positives = 239/394 (60%), Gaps = 18/394 (4%)

Query: 188 KDITDQAQAF---------LDMQIAEAKTSYQASQETVSLYIWLVAIFSGVAMLAISVSS 238
           KD+T Q             L MQ+ +  T++  S     L I  V +   + +LA    +
Sbjct: 256 KDLTTQGATIVKLGEELYGLQMQMGKEDTAHARS-----LQIGCVVLVMLLGILA----A 306

Query: 239 VFIIRRVSLSVVQLEETAVDIAAGDLTKRIRLGGHDEFAHIAEHVNRIASDFQQAVTNTH 298
           V I R+++  +         IA+GDLT    +   DE   + + + R+ +  ++ ++   
Sbjct: 307 VIITRQITRPLRDTLAIVERIASGDLTHTEAVTRRDELGVLQQGIQRMGTTLRELISGIR 366

Query: 299 ASTSRLASAAEENAVVSTQTQRNVLDQQQQTQLIATAIHEFTATVREVAQSAASAATASQ 358
              +++ASAAEE + V+ QT   V  Q+ +T  +ATA+HE +ATV EVA++A  A+ A+ 
Sbjct: 367 DGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVHEVARNAEQASVAAS 426

Query: 359 DANGAAHGAQGVVDESIAVIEALAQELSRASEAMTLLAQHSNEIGTVVDVIQAISEQTNL 418
           DA+  A     VV E+I  IE LA E+ R+S+AM +L Q S++IG V+DVI+A++EQTNL
Sbjct: 427 DADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVLEQDSDKIGKVMDVIKAVAEQTNL 486

Query: 419 LALNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTEEIQKMIQRLQQGARDSMQMMQS 478
           LALNAAIEAARAGE GRGFAVVADEVR LA+RTQ STEEI+ ++  LQ G R    +M  
Sbjct: 487 LALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTEEIEGLVAALQNGTRQVSGIMLG 546

Query: 479 GTEQVKLSVDKSLMVRDALQQILNSIEEINALNAQIATASEEQSSVTEEININITNISEI 538
                  SV+ +     +L+ I  ++  I A+N QIA A+E+QSSV +EI+ +I N+ ++
Sbjct: 547 SRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQIAAAAEQQSSVADEISRSIVNVRDV 606

Query: 539 SDQTAEGARQSSDATEDLARLAESMEADIAHYKV 572
           S+QTAE + +++ ++ +LARL   ++  ++H++V
Sbjct: 607 SEQTAEASEETAASSVELARLGGQLQMMVSHFRV 640