Pairwise Alignments

Query, 489 a.a., ATPase central domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score =  108 bits (269), Expect = 9e-28
 Identities = 73/235 (31%), Positives = 129/235 (54%), Gaps = 18/235 (7%)

Query: 232 FSQVAGLHNLKKWLSQRS--PASSAEG----RVDHPKGILLLGVQGSGKSLAAKAVAGMW 285
           +S V GL ++K+ L +    P  + E      +  PKG+LL G  G+GK+L AKAVA   
Sbjct: 506 WSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANES 565

Query: 286 QRPLLRLDMSALYNKYIGETEKNLRNALALADLMAPCVLWIDEIE-----KGLSSGSSDD 340
           +   + +    +++K++GE+EK +R     A   AP V++ DEI+     +G+  GSS  
Sbjct: 566 EANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAPKRGMDFGSS-- 623

Query: 341 GTSKRILGALLTWM--AERKSEVFLVATANDISALPPELMRKGRMDEIFFVDLPDDSVRQ 398
           G +++++  LLT +   E   +V ++A  N    L   L+R GR+D I  V +P+++ R 
Sbjct: 624 GVTEKVVNQLLTELDGLEEPKDVVIIAATNRPDILDQALLRPGRLDRIVLVPIPNETARL 683

Query: 399 AIFLIHLQRRQLDPLNFDLAKLSQASQGFSGAEIEQAIISARYTARALEQNVSQQ 453
            IF +H +   +   + +L KL++ ++G++GA+IE     A     AL +N++ +
Sbjct: 684 EIFKVHTKGMPIGK-DVNLEKLAKETKGYTGADIEAVCREAAMI--ALRENINSE 735



 Score = 87.8 bits (216), Expect = 1e-21
 Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 3/171 (1%)

Query: 245 LSQRSPASSAEGRVDHPKGILLLGVQGSGKSLAAKAVAGMWQRPLLRLDMSALYNKYIGE 304
           L  R P    +  ++ PKG+LL G  G+GK+L AKAVA         ++   + +KY+GE
Sbjct: 195 LPMRYPELFDKLGIEPPKGVLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGE 254

Query: 305 TEKNLRNALALADLMAPCVLWIDEIEKGLSSGSSDDG-TSKRILGALLTWM--AERKSEV 361
           TE+NLR     A+  +P +++IDEI+          G   +R++  LLT M   E + ++
Sbjct: 255 TEENLRKIFEEAEENSPSIIFIDEIDAVAPKRDEASGEVERRMVAQLLTLMDGLESRGQL 314

Query: 362 FLVATANDISALPPELMRKGRMDEIFFVDLPDDSVRQAIFLIHLQRRQLDP 412
            ++A  N   ++   L R GR+D    + +PD   R  I  IH +   L P
Sbjct: 315 VILAATNRPDSIDMALRRPGRLDREITIGIPDRHGRNEILQIHTRNMPLQP 365