Pairwise Alignments

Query, 407 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 412 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Xanthomonas campestris pv. campestris strain 8004

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 94/333 (28%), Positives = 148/333 (44%), Gaps = 21/333 (6%)

Query: 40  EEEMPVPIVDVMPVRSETVSLNLPSYGVVLPKNKTQLVTEVQGRMLTISDKFVAGGIVKR 99
           E   PVP+  V+P  ++ V +   + G V   N   +  +V G++++++  F  G  VK+
Sbjct: 43  ENSGPVPVT-VVPAATQDVPVYATALGTVTALNTVTVNPQVSGQLMSLN--FQEGQEVKK 99

Query: 100 GDMLAQIEPSDYEADLMQAQATLAQAKAALDEEIARGEVAKEDWKGYDGGVP-PELGLRV 158
           G +LAQI+P   +A   QA A   Q +A L    AR    + +   Y   V   +L  + 
Sbjct: 100 GALLAQIDPRTLQASYDQALAAKRQNQALL--ATARVNYQRSNDPAYKQYVSRTDLDTQR 157

Query: 159 PQLKKEQANVKFAEAALARAQRNLERTTIRAPFDGIIKSRNVDLGQYVTLGTNLGELYDT 218
            Q+ + +A V   +A +  AQ  L+ T + AP DGI   R VD+G  V+  + +  L   
Sbjct: 158 NQVAQYEAAVAANDAQMRSAQVQLQFTRVTAPIDGIAGIRGVDVGNIVSTTSTIVTLTQI 217

Query: 219 RIAEIRLPLANHELAYLESIDNPDTQVTLSAELAGRTVNWTGKIVRSEGVIDA-DNRMVY 277
           R   +   L   EL  + S     T + ++A   G        ++ ++G +D  DNR+  
Sbjct: 218 RPIYVSFSLPERELPAVRS-GQAATPLPVAALDRG-----DAHVISADGKLDVIDNRIAA 271

Query: 278 LVAEVKDPYLRQNKTEGQLPLKYGSFVNAIIKGRTVEGIVKLPRYIVR----DHQVAVVR 333
                    +  N      P   G FVN  ++ RT+ G   +P   V+       V VV 
Sbjct: 272 DSGTFGARAIFGNADNALWP---GQFVNVRLQLRTISGGTVVPTQAVQRGPDGDYVYVVG 328

Query: 334 DDNTLEMRE-VNVVRSDIDKVYIKDSLKDGERI 365
            D+T +MR  V  V  D   V I   LK GER+
Sbjct: 329 SDSTAQMRTVVQGVEVDDSHVQITKGLKPGERV 361