Pairwise Alignments

Query, 436 a.a., type II and III secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 693 a.a., fimbrial protein from Pseudomonas fluorescens FW300-N2E3

 Score =  113 bits (283), Expect = 2e-29
 Identities = 69/249 (27%), Positives = 122/249 (48%), Gaps = 12/249 (4%)

Query: 164 VKMQVKIVEFNKSTLNNVGIKWETSMAGP----AYGVAKGFTANPIFNVASPGQYTEAIT 219
           V ++ +IVE N     ++G++W  S+       A GV+ G  AN    + +PG  +   T
Sbjct: 441 VMIEARIVEANVDYDKSLGVRWGGSVRNKGNWNASGVSNG--ANASSTIGTPGSTS---T 495

Query: 220 KSITENIGVLDTRGWSSLGIVSG---IGSQIQLLSEKGDARLLAQPNLTTRSGESASFLA 276
            S   ++G         +  ++    +  ++  + + G+  +++QP + T   E+A  L 
Sbjct: 496 NSPFVDMGAAGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILK 555

Query: 277 GGEFPIRSVSGLGAVDVEYKEYGIKLDIEPVVDEQQNIVSRVMAEVSSIDPSVAVDGVPG 336
           G E P +  S  GA  V +KE  + L++ P +     I+  V       D    V  VP 
Sbjct: 556 GTEIPYQEASSSGATSVAFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPP 615

Query: 337 MLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTEL 396
           +      + + V + ETIVI G+ ++  SK+V+K P LGD+P LG LF+     + K+EL
Sbjct: 616 IKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSEL 675

Query: 397 VIFVTPVVV 405
           ++F+TP ++
Sbjct: 676 LVFLTPRIM 684