Pairwise Alignments

Query, 436 a.a., type II and III secretion system protein (RefSeq) from Shewanella loihica PV-4

Subject, 511 a.a., pilus assembly transmembrane protein from Sinorhizobium meliloti 1021

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 24/213 (11%)

Query: 243 IGSQIQLLSEKGDARLLAQPNLTTRSGESASFLAGGEFPIRSVSGLGAVD---------- 292
           I S I  + + G  R LA+P+LT  SG+ A F  GGEF +  V  +   D          
Sbjct: 274 ISSYINAMEQAGVMRTLAEPSLTAISGQEAKFYVGGEFRLAGVQEVSTDDETGQTTVERE 333

Query: 293 VEYKEYGIKLDIEPVVDEQQNIVSRVMAEVS------SIDPSVAVDGVPG-----MLTRR 341
           V   EYGI+L+ +PVV     I  ++  +VS      S+    ++  +PG     +  R 
Sbjct: 334 VNDVEYGIRLNFKPVVLGPGRISLQIETDVSEPTYEGSVVTGNSMTAIPGNTFLGIRRRE 393

Query: 342 TESVINVKNNETIVISGLVNSEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTELVIFVT 401
             + + + +  +IVI+GLV   + + ++  P    IPILG LF+S+DF+  +TELVI  T
Sbjct: 394 ASTSVELPSGGSIVIAGLVQDNIRQAMSGLPGASKIPILGTLFRSKDFQRSETELVIIAT 453

Query: 402 PVVVYPGQEEHDTQLNRGLEMAEEATKLEAFYI 434
           P +V P      + ++R  +    A  LE+F++
Sbjct: 454 PYLVRPVAR---SAISRPDDNFNPANDLESFFL 483