Pairwise Alignments

Query, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  372 bits (956), Expect = e-107
 Identities = 201/438 (45%), Positives = 280/438 (63%), Gaps = 9/438 (2%)

Query: 3   FTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL-E 61
           F+++GL   +L  +A+ GY  P+PIQA+AIP  L+G+DV+  AQTGTGKTA F +PL+ +
Sbjct: 9   FSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQ 68

Query: 62  LLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQLK 121
           ++  G +  +K VR LVL PTRELA QIA ++    +  P+++ +V GGV I+PQIS+L 
Sbjct: 69  MMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLS 128

Query: 122 RGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQN 181
           RG DIL+ATPGRLLD+  + A+     + LVLDEAD+MLD+GFIH ++KI A+LP +RQ 
Sbjct: 129 RGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQT 188

Query: 182 LMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQG 241
           ++FSAT   ++  +A   + +PV I V P    A+ + Q +  + K +K + L +L+   
Sbjct: 189 MLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAH 248

Query: 242 DWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVATD 301
             ++ LVF RTKHG  +L K L A G +AAAIHGNKSQG R +ALA+FKSG+V++LVATD
Sbjct: 249 KDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATD 308

Query: 302 IAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIERL 361
           +AARGLDI  +  V N++LPNVP+ YVHRIGRT RAG DG+AV+  + +E   L  I++ 
Sbjct: 309 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKT 368

Query: 362 IGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQRSDKA 421
           +   +P   V    P   LP+      R G  K     KP  + +R S     GQ     
Sbjct: 369 MNLNIP---VASGRPWEVLPDAKAPAGRRGGGKPGGGGKPGGHRRRRSGGGGGGQ----- 420

Query: 422 GQPRRGDQAQGNKEGQGR 439
           G  R G Q  G   GQG+
Sbjct: 421 GGARSGGQGAGQGGGQGK 438