Pairwise Alignments

Query, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 516 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  335 bits (860), Expect = 2e-96
 Identities = 192/490 (39%), Positives = 289/490 (58%), Gaps = 24/490 (4%)

Query: 3   FTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLLEL 62
           F+ L L+  +LKA+ + GY++P+PIQA AIP  L G+DV+  AQTGTGKTA FTLP++ L
Sbjct: 4   FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQLKR 122
           L++G RAR++  R+LVL PTRELAAQ+AE+  TY +HL L  A++ GGV    Q + + +
Sbjct: 64  LARG-RARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDK 122

Query: 123 GVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQNL 182
           GVD+L+ATPGRLLD +++  +  S ++ +V+DEADRMLDMGFI DI++I  + P  RQ L
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 183 MFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQ---LICPVDKNKKSAALVKLI- 238
            FSAT + EI  +    ++ P  + V  + +T+  + Q   L     ++++ +   KL+ 
Sbjct: 183 FFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLR 242

Query: 239 ----QQGD-WQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGD 293
               Q+G+     ++F   K   + +AK L+  G  AA IHG+  Q  RTK L  F+ G 
Sbjct: 243 HLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGS 302

Query: 294 VRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAK 353
           +R LVA+D+AARGLD+  +  V NFD+P+  EDYVHRIGRTGRAG DG A+ +   ++ K
Sbjct: 303 LRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKDEK 362

Query: 354 LLADIERLIGKLLPRAE----VEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSS 409
            L DIERL+   +PR E        EP     + + + +   +    R P  +S++ +  
Sbjct: 363 NLEDIERLVQNEIPRIENPLKKAKAEPKAKDSKDDASSETTERKTRSRRPSARSSAAKDV 422

Query: 410 NRSSNGQRS---------DKAGQPRRGDQAQGNKEGQGRRRTGASTGTSKPASEGQQAQN 460
           N S++ Q           D   Q ++  + +    G+G+     S+G  K   +G Q   
Sbjct: 423 NESADAQAQISDAPSAEVDAPAQEQKAPEQEKRASGRGKPAESKSSG-PKSGQKGNQKSG 481

Query: 461 QGKQEHRDGN 470
           +G+  +  GN
Sbjct: 482 RGRGGNDRGN 491