Pairwise Alignments

Query, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 639 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  270 bits (691), Expect = 1e-76
 Identities = 172/531 (32%), Positives = 274/531 (51%), Gaps = 8/531 (1%)

Query: 114 NTTGRYFTHEGLFKTVSPSDDRDAWFYRFLGSGKDYDLSIDVDDLNQTPTLFINYLVQIE 173
           N  G  F  +    T         W+     +GK       V    QT  + +   V+ +
Sbjct: 111 NEQGEMFRQDPSLNTADYDPRVRGWYKEAKAAGKPITTEPYVSVTMQTLVVTLAEPVRYQ 170

Query: 174 GKPSGVAGVGLSLNSLADNIKQYKIGEQGRVYLTDGNGQIKIHGQSQFAGKQLSALGIKD 233
           G+  GVA   L+L+ L  ++   ++  +G   L +  G+I  H       K    +    
Sbjct: 171 GQLIGVAASNLALDKLIKDVLAIEVPGKGYAILVNQKGKIVAHPTQDLILKPTEEMSA-- 228

Query: 234 PQALLSQQTFATSEYD-----NNGVDTLVASRYIPSIGWYLIAEVPQDELFGAINKASWQ 288
            Q  +S+   A  ++       +G D ++ +  + +  W L+  + +  L   +N     
Sbjct: 229 -QLTISKLNIAAKDHSLFQLSMDGRDKVLMAEEVANTDWLLVMVMDKGVLEQPLNDMLMV 287

Query: 289 LALMGLILAAIIMFTSAWLINRLISPFGELADMLKSIGEGEGDLSLRLDDSRQDETGSMA 348
              +GL +  ++   ++W + R ++  G +A+ L  I EG+GDL+ RLD   QDE G +A
Sbjct: 288 QIGIGLGILLVMALLTSWFVARQLNELGNIANALADIAEGDGDLTRRLDVRSQDEVGLLA 347

Query: 349 ASYNQFVTYLSKTLQSVSATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMG 408
             +N+FV  L + +++V   +  L Q  +     A      I  Q  +I  VATA+ EM 
Sbjct: 348 DKFNKFVDRLHQMVKNVREVSVALTQGADHAAASATQASKRIRTQQDEITMVATAVTEMA 407

Query: 409 MTAQEIASSANNAAENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDAS 468
               EIAS+A N A+NA  + Q    G   +Q +  S+  ++++L      +S+L   A+
Sbjct: 408 SATAEIASNAENTAKNATQSVQLGEDGFAQMQQSKQSIDQLAQELTGAVRIISELEVHAN 467

Query: 469 SIDTVLEVIRGVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRH 528
            I T+L  IRG++EQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+ R+HASTE+I+ 
Sbjct: 468 EISTILSTIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTEEIQT 527

Query: 529 IIEKLQAKTTEVVNAIGQSTNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEE 588
            I  LQ  TT  V+ + +S    + S  + + +G  L +I+E IQ +S+M+ QIA+A EE
Sbjct: 528 KIAGLQKVTTTAVSVMTESHKLVETSVADVNQTGASLQAISEAIQQISDMATQIASAAEE 587

Query: 589 QSNVVGEINPHVTAIADISRSSSDVVRQTSLDCSDLREMAVQLNELVSRFK 639
           QS V  +IN +  ++ ++S   ++  +Q+      L  MA +LN+ +SRFK
Sbjct: 588 QSLVTADINVNTESVREVSDQLAEEAQQSVQQAKSLHAMAQELNKEISRFK 638