Pairwise Alignments

Query, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  360 bits (923), Expect = e-103
 Identities = 211/638 (33%), Positives = 359/638 (56%), Gaps = 7/638 (1%)

Query: 3   KLNIRRKVVLATLASVVLSIFLISLYAMSNSREIILDSTLNRELPAVLGEVANDIDAQLL 62
           +++I++KVVL    +V+ S  ++ + A   +RE++    ++ ELP +L  + +DID ++L
Sbjct: 12  QMSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDHEVL 71

Query: 63  MPITVSKVMANNLEYQAMIRQGEPE-ASQATLIASLANIRQRFGAITAFLVSNTTGRYFT 121
             +  ++ +A+N   Q  I   E + A++A L+  L N+R ++    A + +  T  Y+ 
Sbjct: 72  QLLASAQQIASNEFVQQAIATTERDPATEALLVKQLNNLRDQYRLNDASVANRKTAYYWN 131

Query: 122 HEGLFKTVSPSDDRDAWFYRFLGSGKDYDLSIDVDDLNQTPTLFINYLVQIEGKPSGVAG 181
             G  + ++    +D WF+ F+GSGK   +S+   + N    +F NY + + G    ++G
Sbjct: 132 QNGFLRELN--QQQDGWFFGFIGSGKPTMVSM-FQEANGEVKMFANYQL-VNGNT--MSG 185

Query: 182 VGLSLNSLADNIKQYKIGEQGRVYLTDGNGQIKIHGQSQFAGKQLSALGIKDPQALLSQQ 241
           +  S++ +   +  +KI + G V+LT+  G+++IH Q +     L  +      ALL++ 
Sbjct: 186 MSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGSGASALLNKS 245

Query: 242 TFATSEYDNNGVDTLVASRYIPSIGWYLIAEVPQDELFGAINKASWQLALMGLILAAIIM 301
            F     D  G + +VAS YI S+ W+L+  VP  E+F  ++  + ++ L  L +AAI +
Sbjct: 246 GFNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFI 305

Query: 302 FTSAWLINRLISPFGELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKT 361
           F   +L N +  P  ++A     +G G+GDLS R++    DE   ++  +N F+  + ++
Sbjct: 306 FMGIFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQS 365

Query: 362 LQSVSATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEIASSANNA 421
           ++ V+ T+ +L  A E +  +A         Q  +  QV TAI++MG T  EIAS+A  A
Sbjct: 366 IKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATA 425

Query: 422 AENAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVLEVIRGVS 481
           AE A  A  + +QG   V     +++ ++  +  T + V QLA     I ++L+ IRG+S
Sbjct: 426 AETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGIS 485

Query: 482 EQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQAKTTEVV 541
           EQTNLLALNAAIEAARAG+QGRGFAVVADEVR LASR+ +STE+I+ +I +LQ      V
Sbjct: 486 EQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMINQLQNDAKNAV 545

Query: 542 NAIGQSTNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGEINPHVT 601
           +A+      + Q    +  + + L SI++ I  +S+ + Q+ATATEEQS VV  IN ++ 
Sbjct: 546 SAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQSTVVHTINQNIE 605

Query: 602 AIADISRSSSDVVRQTSLDCSDLREMAVQLNELVSRFK 639
            I  I+  ++    + +     LRE++ +L++LV  FK
Sbjct: 606 EINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFK 643