Pairwise Alignments

Query, 398 a.a., putative plasmid transfer protein (RefSeq) from Shewanella loihica PV-4

Subject, 386 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

 Score =  146 bits (369), Expect = 9e-40
 Identities = 107/391 (27%), Positives = 194/391 (49%), Gaps = 27/391 (6%)

Query: 4   LSLVIAVLLSGSASLASAASLYNEARSDAMGGTGVAASNREGAAFINPALLAIHAPKYSG 63
           L++V+A+  S SA    A++L  +AR   MG TGV+ ++   A + NPAL A++    S 
Sbjct: 9   LAVVMAMAFSSSAF---ASNLLMDARGAGMGNTGVSTADYLLAPYYNPALTAVYRKNDSF 65

Query: 64  GAVMLPVLGAEAANIDNLTDKFDALQASYDGLE----AAINASDVTGITNYRDMLVADLK 119
           G ++LP +G  A + D      D LQ S +  E     A    +V  +  Y D L     
Sbjct: 66  G-ILLPSIGLRAEDKDESLKTIDDLQDSIEQFERAGVGAATQENVDQLNRYLDQLA---- 120

Query: 120 SLDGENAYGSVGLGFSVVLPTKRMPMSIFYKTYIDAVSVAVIEDSDIDALTNLDPNNPPA 179
             D +    + G+G +V LP   + ++ F + Y + ++ A +     ++   +      +
Sbjct: 121 --DDKPLAVTAGIGIAVALPLDAVSLNFFTRGYAEVIAKANVAAKSGNSANEVKTRYESS 178

Query: 180 VTDLDSQGAVVAGAISDLGVALSFPLSIVNMPVAVGISPKLQRIDTYNYVVSANNFDADD 239
             DL + G       +++G+A+   + +    VA+G++PK+Q++ TY    S  +FD DD
Sbjct: 179 DVDLTAFG------YTEVGLAVGKQVVLGGQTVALGVTPKVQQLRTYQDNASVKSFDLDD 232

Query: 240 FDDNKYRNDDTVANLDIGVAIQPLERMTIGLSGRNLVSQKLDTVEAMGRKFTYRVEALYT 299
           +D ++ +  D   NLD+G A+  +++  +G+  ++L ++ + T     R  TY+++    
Sbjct: 233 YDKSEVK--DNSFNLDMG-AVWLIDQYRVGIVAKDLFAKDIQT---QNRNNTYKLDTQIA 286

Query: 300 LGVAYDWDNFSLTTDVDLNGHKRFD-EIGETQYWRLGGEMRATDWLALRVGYRHDMKDTS 358
           +  +Y  D F    D+DL   +RF+ +  +TQ+ R G E  A  W  LR GY  D++++ 
Sbjct: 287 VSGSYVSDFFIAAVDLDLTKQRRFNGDNDDTQFMRFGVEGNAWGWAQLRAGYEVDLQNSL 346

Query: 359 SNLYTLGTGFTIGRSFNLDLTGLVGTDDAVG 389
            N  ++G G +     +LDL G    D+  G
Sbjct: 347 DNSVSVGLGVSPWDVVSLDLAGSYAGDNQFG 377