Pairwise Alignments

Query, 552 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

Subject, 721 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

 Score =  147 bits (372), Expect = 1e-39
 Identities = 138/557 (24%), Positives = 243/557 (43%), Gaps = 28/557 (5%)

Query: 7   LLAQNQSFNELLLTSVFINLLSLALPFTMLQIYDRILPNEAHGTATVLVIGVAIAILLEL 66
           +L Q     ++ L ++ + + +L  P     + D++L   +  +  VL + +    + E 
Sbjct: 160 ILRQKSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEP 219

Query: 67  ILRYARSWLLGASAANYELHTITRVVKRLLNADYHHIENLGAGKISHGIHSIAAMRDIYS 126
              Y R+ + G  A+        R+ + L+     + +    G+I   +  +A +R   +
Sbjct: 220 AYSYLRNTVFGHLASQVNAELSGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLT 279

Query: 127 GQAAVALMDFPFVLIFLALVAYIGGPLVFIPL-------IVWLIAGVRVWQLGQKLSLAT 179
           G   + L+D  FV +FLA++ +    L ++ +       ++WLIAG     L +K   + 
Sbjct: 280 GSTLMLLLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVLWLIAG----PLIRKKVESE 335

Query: 180 KELSLSQDERTRLLMLVLSGLTTTKAMALESRMTYAYKKINHQRLAQQEEVDWLSAKLQE 239
            E   S    T  L   ++G+ T K  A E R    +++I  Q+L +  +         +
Sbjct: 336 YE---SDANATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQ 392

Query: 240 LIQGTAQATTLCLVMIGCFEVLNGNLTTGGLAACSILAGRAVAPLSAIGSLRAKYVSAKE 299
            I    + T   L+  G   VL G +T G L A ++LAG    P+  +  +   +     
Sbjct: 393 AIALVQKLTAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLI 452

Query: 300 AMDQVNALIATPQETFNGQTRYQQKLPLGPISFESVS---AEKTSARLDNISLTIPAGCI 356
           A+ +V  ++  P+E          +L  G I F ++     +     L N+SL I  G  
Sbjct: 453 ALRRVGDILDEPRENSKQGLASVPELD-GGIEFSNIRFRYHQDAPEVLANLSLKIKPGQF 511

Query: 357 VTVTSNPMTHASLLLSTIGAYHQLDSGQIAIAGVPQQDHDGFEYRQSICYVPPWASLFSG 416
           + VT    +  S L   +   +    GQ+ + G+     D    R+++  V   + LFSG
Sbjct: 512 IGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMSVVLQESILFSG 571

Query: 417 SILENMTLFRREREASAMLIADQL-GLSATLAQLPAGYQTQVGSNENQVLNKGAIKLIAL 475
           S+ +N+ L + +     +  A QL G  A +  LP G+   VG  +   L+ G  + IAL
Sbjct: 572 SVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVG-EKGAALSGGQRQRIAL 630

Query: 476 VRALAQSPSILLLDEPMVSLDADSQARLLQVLME-RRGQMTVVIA------SYFDEVAAL 528
            RAL  +P ILLLDE   +LD +S+A ++  + E  RG+  + IA       + D +  L
Sbjct: 631 ARALLVNPRILLLDEATSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFVL 690

Query: 529 SDMQIA-LGEHGELAGQ 544
              Q+A  G H EL  Q
Sbjct: 691 DKGQVAESGTHEELLAQ 707