Pairwise Alignments

Query, 530 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

Subject, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

 Score =  154 bits (390), Expect = 6e-42
 Identities = 100/343 (29%), Positives = 186/343 (54%), Gaps = 6/343 (1%)

Query: 44  LVIDYLFILSVLLALNSMFG----RLRSAAIHLSEGDLRVRLDTQEALGGPLFKAFNQIG 99
           L+I ++  L ++  L S       R+ SAA +LS    R+ LD  + L   + K+FN   
Sbjct: 206 LIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRT-RLELDGNDELCD-IGKSFNAFI 263

Query: 100 EDVSRTVFSLSKSAQQLVRVADTVQADSQVSKTGALRQKDDVEEAKQIVSKLFETTAEVS 159
           + V  ++  +++++++L  +A +V   + ++++    Q+D   +    + +L  T +E++
Sbjct: 264 DKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIA 323

Query: 160 SFCESTSQLASESKRQADRGKQEMRSLETALEDVGEQFAASDQNFEQLKQESLQIGQVVE 219
           S     + +A ++   +  GK+ +  ++  ++ +  +   + Q    L  +   I   ++
Sbjct: 324 SNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLD 383

Query: 220 TIKGIAEQTNLLALNAAIESARAGELGRGFAVVADEVRSLALRTQVATEDINNKIVNLQT 279
           TI+ I+EQTNLLALNAAIE+ARAGE GRGFAVVADEVR+LA R+  +TE+I   I  LQT
Sbjct: 384 TIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVINRLQT 443

Query: 280 QINDAIAAMQKNRQSVLHSQSVANEAESHFEELVSQIDAIDALGQEIAVASQHQVEQTQM 339
           +   A+ AM+K R         + +A     E+ SQID I+    ++A A++ Q    + 
Sbjct: 444 ESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATATEEQSTVVED 503

Query: 340 LETCLVEVDKVSDENVKATQETLLASITVRNLAGEIDSLLHRF 382
           +   + ++++++ E      E   AS +++ L+ ++D L+  F
Sbjct: 504 INRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSF 546



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 69/314 (21%), Positives = 126/314 (40%), Gaps = 78/314 (24%)

Query: 180 KQEMRSLETALEDVGEQFAASDQNFEQLKQESLQI---GQVVETIKGIAEQTNLLA---- 232
           KQ  + L+T L+   +Q  AS ++FE  + + + I   G ++  I  +   TNL +    
Sbjct: 167 KQANQILDTLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAY 226

Query: 233 LNAAIESARAG----------------ELGRGF---------------------AVVADE 255
           L   + SA A                 ++G+ F                     A +A  
Sbjct: 227 LKDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASS 286

Query: 256 VRSLALRTQVATEDINNKIVNLQTQIND-----------AIAAMQKNRQSVLHS---QSV 301
           V   A  TQ       ++ V + T I++           A  A    +Q+ LHS   + V
Sbjct: 287 VSQRAHMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKV 346

Query: 302 ANEAESHFEELVSQID----AIDALGQEIAVAS------QHQVEQTQMLE-TCLVEVDKV 350
             E ++  + LV+++D     + +L  +I   S      +   EQT +L     +E  + 
Sbjct: 347 VGEVQNRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARA 406

Query: 351 SDEN----VKATQETLLASITVRNLAGEIDSLLHRFATDS----EQIGREDTRRDKLIEW 402
            ++     V A +   LAS +  +   EI  +++R  T+S    E + +  ++ D ++E+
Sbjct: 407 GEQGRGFAVVADEVRTLASRSAAS-TEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEF 465

Query: 403 SDALDLNLAEINRQ 416
           S   + +L EIN Q
Sbjct: 466 SAKANQSLTEINSQ 479