Pairwise Alignments

Query, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

Subject, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

 Score =  418 bits (1074), Expect = e-121
 Identities = 209/514 (40%), Positives = 322/514 (62%), Gaps = 4/514 (0%)

Query: 27  QTPQPL-TELTQLQQTIDSDIAKLGNANGEMKQFIEYRIKEHANQLHDKFKLMMNQQPLD 85
           ++P  L  E+ Q++Q I      L  A G+++  ++ ++ +   +L       + ++ + 
Sbjct: 41  ESPSELENEIDQIKQYISELSVTLKQATGDVRDALQLQLFQKNAELRKSLSKAVEEKTIA 100

Query: 86  KANLLPLLQKHLAFIDKVADYYAADIDQFKQQLG-SDNDTGVMYKLAMRDRQR--DEILS 142
           K  L+ L+     + ++   Y +  ++     LG + ++  + Y    R+ Q+  D    
Sbjct: 101 KEKLVELVNIQQRYTEEANHYISERLNSLDDSLGKASHEEKLSYITTYRELQQYLDVTYH 160

Query: 143 AKYETLTWLDALGEDTQAIKTQLTAQLLKRSDMLNSLVHFTQDKLKLAVDEAAKAGKDVT 202
           +  E + WL +L  DT+ ++  L  ++ +R  +L++ + + + ++ +  ++   + +   
Sbjct: 161 SSAENIGWLSSLDIDTRDVEKTLRERINQRLRLLSASLEYLKQQISVINNQIKSSPESEK 220

Query: 203 AEQTALVTNLNERLSLTSASLSVAIELLDAMSQDTTALKQTLFSISGDITQDVLNVDVAS 262
           A     +    +RL + + SL   + + D    +T   K+ +F ++G ITQD+LN  V  
Sbjct: 221 ANLQLALLFTQQRLDIVTKSLRSVVGIADQFEIETADYKRQIFQVTGSITQDLLNTQVVF 280

Query: 263 NLLDQWWNQAKNQALDNGPGLLFKLFVFLLILFLAHLAGKAVQRIVKKMVSNSKLKFSKL 322
           +++  W N   N    N    LF+LF+FLLIL  A    K  + +V+  V++  ++ S L
Sbjct: 281 SIVRHWSNSLVNWLASNAVQHLFQLFIFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHL 340

Query: 323 LQDFFVSLSGKTVFALGLMIALSQLGFELGPLLAGFGVAGVIIGFALQDTLSNFASGMMI 382
           +QDFFVS+SGK V+ +G+++ LSQ+G  L P+L GFG+AGVIIGFALQDTLSNFA+GMM+
Sbjct: 341 MQDFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMML 400

Query: 383 LIYRPYDVGDLINAAGVTGKVSQMSLVSTTIKTLDNQRLIIPNNKIWGDTINNITVEHQR 442
           LIYRP+DVGD ++A GV GKVS MSLV+TTI+T DNQ +I+PN+KIWGD I N+T E  R
Sbjct: 401 LIYRPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIR 460

Query: 443 RVDMTFGIGYGDNIEKAEQVLRGIVDEHPKVLKQPEPTVKLHLLGESSVDFVVRPWVKPE 502
           RVDM FGIGY D++ KAE VL  IV  HP VLK PEP +K+H L  SS+DF+VRPWVK +
Sbjct: 461 RVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTD 520

Query: 503 DYWDVYWDITRAVKMRFDQEDISIPFPQRDVHIY 536
           DYWDVYWD+T+ VK+RFD+E ISIPFPQ+DVH++
Sbjct: 521 DYWDVYWDVTKEVKLRFDREGISIPFPQQDVHLH 554