Pairwise Alignments

Query, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

Subject, 308 a.a., putative small-conductance mechanosensitive channel from Phaeobacter inhibens DSM 17395

 Score =  165 bits (418), Expect = 2e-45
 Identities = 86/236 (36%), Positives = 135/236 (57%), Gaps = 3/236 (1%)

Query: 299 LAGKAVQRIVKK---MVSNSKLKFSKLLQDFFVSLSGKTVFALGLMIALSQLGFELGPLL 355
           LAG  V   VK+    + +S       L  F  +L+   + A  ++  L+  G +   ++
Sbjct: 42  LAGFIVASWVKRRIVQIGDSHASLDVTLFHFLGNLARYVILAFAVLFVLNTFGVQTTSII 101

Query: 356 AGFGVAGVIIGFALQDTLSNFASGMMILIYRPYDVGDLINAAGVTGKVSQMSLVSTTIKT 415
           A  G AG+ IG A+Q  LSN A+G+M++++RP+ +GD I      G V +++L +T I +
Sbjct: 102 AAIGAAGLAIGLAMQGALSNVAAGIMLILFRPFKLGDFIEVNDEMGTVKEITLNNTVIAS 161

Query: 416 LDNQRLIIPNNKIWGDTINNITVEHQRRVDMTFGIGYGDNIEKAEQVLRGIVDEHPKVLK 475
           L N ++IIPN+++WG+TI N +    RR +  FG+GYG N+  AEQV+R  +    +   
Sbjct: 162 LSNLKVIIPNSEVWGNTITNYSEFDTRRAEWNFGVGYGANLATAEQVIRDTIMSDSRSHA 221

Query: 476 QPEPTVKLHLLGESSVDFVVRPWVKPEDYWDVYWDITRAVKMRFDQEDISIPFPQR 531
           +PEP ++++ L  SSVDF+VR WV   +Y+    D+ R VK   D   I IPFP R
Sbjct: 222 EPEPFIQVNNLNSSSVDFLVRVWVDAAEYFQYQADMKRKVKEALDAAGIDIPFPTR 277