Pairwise Alignments

Query, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

Subject, 360 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

 Score =  138 bits (348), Expect = 3e-37
 Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 2/246 (0%)

Query: 288 FVFLLILFLAHLAGKAVQRIVKKMVSNSKLKFSKLLQDFFVSLSGKTVFALGLMIALSQL 347
           +  L+I F   ++ ++ + ++ K   + + KF++      V      + A G++  +  L
Sbjct: 98  YSLLIIYFTYRISNRSKRYLLLK--GSQEGKFAEYRLKATVFHYSAMIIAFGIVFQMLGL 155

Query: 348 GFELGPLLAGFGVAGVIIGFALQDTLSNFASGMMILIYRPYDVGDLINAAGVTGKVSQMS 407
             +LG LL   G+ G+I+GFA Q  ++NF SG+ +   +P  +GD +     +G V+ + 
Sbjct: 156 TSKLGTLLVAGGITGIILGFASQTVVANFISGIFLYFDKPLKIGDSVQIGTNSGIVNDIK 215

Query: 408 LVSTTIKTLDNQRLIIPNNKIWGDTINNITVEHQRRVDMTFGIGYGDNIEKAEQVLRGIV 467
           ++ST I+T D   + IPN K++   I N      RRVD+  GI Y ++ ++A  ++  I+
Sbjct: 216 MMSTRIRTWDGVLVRIPNEKVFNSEIVNNKKYPARRVDIVVGIAYKEDAQRAMDIISKIL 275

Query: 468 DEHPKVLKQPEPTVKLHLLGESSVDFVVRPWVKPEDYWDVYWDITRAVKMRFDQEDISIP 527
           +    VL +PE  + ++ LG SSVD  V+ W   E ++DV  ++ + +K  FD+E + IP
Sbjct: 276 ENMTYVLVEPEFQIFVNDLGNSSVDISVKAWTPSEKWYDVKMELVKNIKKEFDKEKVEIP 335

Query: 528 FPQRDV 533
           FPQR V
Sbjct: 336 FPQRTV 341