Pairwise Alignments

Query, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

Subject, 351 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis S2

 Score =  107 bits (268), Expect = 6e-28
 Identities = 74/286 (25%), Positives = 136/286 (47%), Gaps = 21/286 (7%)

Query: 256 LNVDVASNLLDQWWNQAKNQALDNGPGLLFKLFVFLLILFLAHLAGKAVQRIVKKMVSNS 315
           LN  V  + L  W N++   A+            F  +LFL  +    +   V  +V  S
Sbjct: 76  LNNLVLPDNLSLWLNESLTVAI-----------TFAGVLFLLKIVDDIIVNYVVPIVEKS 124

Query: 316 KLKFSKLLQDFFVSLSGKTVFALGLMIALSQLGFELGPLLAGFGVAGVIIGFALQDTLSN 375
           +      L      L    +   GLM+ LS +G+ +  LLAG G+ G+ +  A +DT+ N
Sbjct: 125 ENTLDDQLVPLMRKLVKFLILIAGLMLILSNVGYNISALLAGLGIGGLAVALAAKDTIEN 184

Query: 376 FASGMMILIYRPYDVGDLINAAGVTGKVSQMSLVSTTIKTLDNQRLIIPNNKIWGDTINN 435
             +G +I++ RP+ +GD I   G  G V ++ + ST +++  +  + +PN  I    I N
Sbjct: 185 LIAGFIIIVDRPFKLGDWIKWGGKEGIVEEVGIRSTRVRSFGDTLITVPNANIVQTEIEN 244

Query: 436 ITVEHQRRVDMTFGIGYGDNIEK---AEQVLRGIVDEHPKVLKQPEP-TVKLHLLGESSV 491
            +   +R+V  T G+ Y   +EK   A++++  ++++H  V+   +P  V     G  S+
Sbjct: 245 FSERRKRQVKATIGLTYDTPVEKVKRAKEIIENVLNDHHGVV---DPIRVSFVEFGSFSL 301

Query: 492 DFVVRPWVKP---EDYWDVYWDITRAVKMRFDQEDISIPFPQRDVH 534
           D  V  +V+    + + +   +I   +K  F++E+I   FP + V+
Sbjct: 302 DLRVEYFVRDFGFDFFLNTKDEINIKIKEEFEKENIEFAFPTQTVY 347