Pairwise Alignments

Query, 366 a.a., ABC-2 type transporter (RefSeq) from Shewanella loihica PV-4

Subject, 365 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  493 bits (1270), Expect = e-144
 Identities = 250/363 (68%), Positives = 299/363 (82%), Gaps = 1/363 (0%)

Query: 5   SLRRIKSITTKEIRQLKRDRITFGMVVMIPLIQLLLFGYAINTDVRNVPVVVVDQSHSAA 64
           SL RIK++  KE RQL RDRITFGMVVMIPLIQLLLFG+AINTDVRN+P+ VVDQS S+ 
Sbjct: 3   SLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSF 62

Query: 65  GRWIVEAVKVTQVVSIEKHYASAEEAEAAITRGEVRAALILPPNLTEKLANGETLGQWVV 124
            R +VE+VKVTQV+ +++HY +  EAE AI  G++RAALILP +L  +      LGQW++
Sbjct: 63  SRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLI 122

Query: 125 DGSDTMVASAISQLRNMPLDQITGQDTQRL-PTFEVALFYNPEQRSAVNIVPGLIAVILT 183
           DGSDTM+A A+  L+NMPL  +     Q L PTFE+ L YNP +RSAVNIVPGL+ VILT
Sbjct: 123 DGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLLGVILT 182

Query: 184 MTMILFTSAAIVRERERGNLELLITTPIKPLELMLGKIVPYILVGLVQMTIILGLGHLIF 243
           MTMILFTSAAIVRERERGNLELLITTP+  +ELM+GKIVPYI VGL+Q+ IILGLGH IF
Sbjct: 183 MTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHFIF 242

Query: 244 DVPINGAIAQLLMGTLLFIAASLTLGLIISTIAKTQLQAMQMTIFIILPTILLSGFMFPF 303
            VPINGA++Q+L GTLLFI+ASLTLGL+ISTIA TQLQAMQMT+FI+LP+ILLSGFMFP+
Sbjct: 243 AVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMFPY 302

Query: 304 EAMPKPAQWIAELLPATHFMRIIRAIVLRGGALSDMQFDALWLIGFTLVGILVASLRFNK 363
           E MP  AQW++ELLPATHFMR+IR IVLRG  L+D+  D LWL  FTL G+++A+LRF K
Sbjct: 303 EGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRFKK 362

Query: 364 RLD 366
            LD
Sbjct: 363 SLD 365