Pairwise Alignments

Query, 323 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

Subject, 321 a.a., hemolysin secretion protein D from Pseudomonas fluorescens FW300-N2E3

 Score = 91.3 bits (225), Expect = 3e-23
 Identities = 85/315 (26%), Positives = 141/315 (44%), Gaps = 30/315 (9%)

Query: 2   RTNRILAIVALIALVAILAYGLMLA-HTPKAERL---QGQIEAREYNISSKVPGRVAQVM 57
           R++   A   +I L+A   +G   + H    E L    G++EA E  I+SK PGR+A+V 
Sbjct: 6   RSSIFFASSLIILLLAAGGFGYWKSMHDRLPEGLYVGNGRLEATEVQIASKTPGRLAEVR 65

Query: 58  VRRGDQVAEGDLLFAIDSPELNAKLMQAQGGRDAAKALQQEADNGARKQQVAASKEQWLK 117
           V  GD+V +G LL  +D+  L A+  QA+     A+ L+   +  A +  V   + + L 
Sbjct: 66  VNEGDKVIKGQLLARMDTRTLEAQRNQAE-----AEVLRARENLSAAQANVQLRQSELL- 119

Query: 118 AKAAATLAETTYKRVEALFSEGVLARQKRDEAFTQWQAAKYTQQAAYAMYQMAEEGAREE 177
                 LA+   KR + LF  G  + Q  D+           QQA +     A   AR +
Sbjct: 120 ------LAQQELKRSQELFRRGYASGQIIDQ-----------QQARFDTANAAVAAARAQ 162

Query: 178 TKAAAEGNARMAEGAVKEVSAILADSQMRSPKSGEVSEVLLHPGELAPSGFPVVSVIDMQ 237
             A        A+  V ++++ + DS +R+P  G +   +  PGE+  +G  V+ +ID  
Sbjct: 163 VSAVGAA-IGAAQAQVAQLTSEIDDSSLRAPIDGVIQLRMAEPGEVLGAGGRVLMLIDPN 221

Query: 238 DAWAVFQVREDQLKGFKVGDTLEVEIPAL-GERYPFKVAHISVMGHFATWRSTESGHDFD 296
           D +    +         VGD   + + AL G   P K++ ++    F T +  E+  +  
Sbjct: 222 DQYMNLYLSASVTGRLTVGDEARILLDALPGHPLPAKISFVAAKSQF-TPKEVETRDERQ 280

Query: 297 MRTFEMELRPVTPIA 311
              F ++LR   P A
Sbjct: 281 KLVFRVKLRLTDPSA 295