Pairwise Alignments

Query, 323 a.a., secretion protein HlyD family protein (RefSeq) from Shewanella loihica PV-4

Subject, 377 a.a., hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 95.9 bits (237), Expect = 1e-24
 Identities = 88/318 (27%), Positives = 148/318 (46%), Gaps = 9/318 (2%)

Query: 5   RILAIVALIALVAILAYGLMLAHTPK--AERLQGQIEAREYNISSKVPGRVAQVMVRRGD 62
           R+  ++ L+  VA  A   +  H P    E L G I+ R+ +++ K   RV+ V V  GD
Sbjct: 4   RLFVLLVLLG-VASAAGWYVTRHAPGDGPEVLHGNIDHRQVDLAFKDAERVSTVQVDEGD 62

Query: 63  QVAEGDLLFAIDSPELNAKLMQAQGGRDAAKALQQEADNGARKQQVAASKEQWLKAKAAA 122
            VA GD++  +++  L+ ++ +++    A +A+    + G+R Q++  ++     A A A
Sbjct: 63  AVAAGDVVATLETERLDLEIARSRATVRAQEAVLARLEAGSRPQEIRRAEADVAAAAADA 122

Query: 123 TLAETTYKRVEALFSEGVLARQKRDEAFTQWQAAKYTQQAAYAMYQMAEEGAREE--TKA 180
             A   + R+ AL + G +A Q  + A      A+     A A   +  EG R E   +A
Sbjct: 123 VNARAVHARMAALLAVGGVAPQDEENARAARDVAEGRAAQARAQLALVREGPRSEDIDEA 182

Query: 181 AAEGNARMAEGAVKEVSAILADSQMRSPKSGEVSEVLLHPGELAPSGFPVVSVIDMQDAW 240
            A   AR  E AV E   +  +S + +P +G V + LL PG++A    PV ++      W
Sbjct: 183 RAALAARRQELAVLERRRV--ESVLVAPTAGVVRKRLLEPGDMAAPSRPVCTIDLTGVKW 240

Query: 241 AVFQVREDQLKGFKVGDTLEVEIP-ALGERYPFKVAHISVMGHFATWRSTESGHDFDMRT 299
               V E  L     G   EV +  A G+ +  +VAH++    F T R+ E+        
Sbjct: 241 VRVFVPESMLATMVPGRAAEVSVDGAPGKVFAGRVAHVAASAEF-TPRNVETPELRTSLV 299

Query: 300 FEMELRPVTPIADLRVGM 317
           +E+ +    P   LR+GM
Sbjct: 300 YEVRVLVDDPGGLLRLGM 317