Pairwise Alignments

Query, 636 a.a., regulatory protein CsrD (RefSeq) from Shewanella loihica PV-4

Subject, 640 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score = 95.9 bits (237), Expect = 5e-24
 Identities = 102/418 (24%), Positives = 189/418 (45%), Gaps = 10/418 (2%)

Query: 225 DPESGIGNRLFLKNRLDALSNKDGMMAPGV-LLLLEMEDLDLLQQEADEFSIQELLTQTI 283
           DP + + NR+ L++R      +    A  V +L L+++   L+        I + L Q +
Sbjct: 218 DPLTDLPNRVLLRDRFLQAQGQAARSANRVAILFLDLDHFKLVNDTLGH-PIGDRLLQAV 276

Query: 284 GGISHLLDSQANSIFSRRSYNQFAIVVPQISLADAEKLAARLLKVCLSQPLEGVNNRDDF 343
                    + ++I SR+  ++F IV+P+++  ++    A  L   + +P+    +R + 
Sbjct: 277 AERLRRGVRETDTI-SRQGGDEFVIVLPELADPESAGSIAGKLMEQMHEPVRVNGHRLNV 335

Query: 344 -FHIGVA-YFKVGESKEQLIEEAEMALRAAQFQGNSGWFMYDKGAVDEEFARGSVRWRSF 401
            F +G+A Y   GE  + L+++A+ A+ +A+  G +    +      E  AR  ++ ++ 
Sbjct: 336 TFSLGIALYPDDGEDFDTLMKKADTAMYSAKEAGRNTLRFFTAAMNVEAAAR--LKLQNR 393

Query: 402 LEYALVNKRVVPFTQAILD-SDGKEHHSEVSCRLRDSSDNLVRATLFLPMAIKCGLIPQI 460
           L+ AL  + +V + Q   D + G+   +E   R RD    LV    F+P+A   GLI  I
Sbjct: 394 LQRALEKEELVLYYQPQFDLASGRILGTEALLRWRDPERGLVPPGEFIPVAEDTGLIGPI 453

Query: 461 ERQVIEAVLFDLLP--KSPKDQRKYSINLSLDTLTSRAFIRWLQTTLLEYRHLTPRLIFE 518
              VI     +L    ++       ++NLS         +      L E R     L FE
Sbjct: 454 GEWVIGEACRELRRWHEAGATDLTMAVNLSPVQFRRSRLVEIAARALQENRLPAECLEFE 513

Query: 519 INEDILVNNLAKLKAPLDMIAKMGASLCVDRVGQQVVSTQYLQSCRVDLIKLHRSIVRQI 578
           + E +L+   A +   L  +  +G  L +D  G    S  YL+   VD +K+ +S +R++
Sbjct: 514 LTESLLIREDAAILETLTALKGLGVKLSIDDFGTGYSSLAYLKRFNVDKLKIDQSFIREL 573

Query: 579 HLRQENQLFVRSLIGGLYRTEVQVFAEGVESLEEWQTLKILGVSAGQGSFFSDPLEAA 636
               +++  V ++I    +  ++  AEGVE+ E+   L+       QG  F  P+ AA
Sbjct: 574 CSNPDDEAIVSAVITMARQLRLRTVAEGVENAEQATMLRRFDCDEVQGFLFGRPMPAA 631