Pairwise Alignments

Query, 452 a.a., sodium:neurotransmitter symporter (RefSeq) from Shewanella loihica PV-4

Subject, 448 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  443 bits (1139), Expect = e-129
 Identities = 225/449 (50%), Positives = 305/449 (67%), Gaps = 12/449 (2%)

Query: 1   MSAKDLGHFSSRIGFIMAAAGSAVGVGNIWGFPTQAATHGGGAFLLVYLVLIFLLGYPML 60
           M++   G F+SR GFIMAAAGSAVG+GN+WGFPTQAA++GG  FLLVYL ++FLL YPML
Sbjct: 5   MASGSRGQFTSRFGFIMAAAGSAVGLGNVWGFPTQAASNGGAVFLLVYLCMVFLLAYPML 64

Query: 61  VAELMIGRHGQTNPADAMAKLGSSKLSRNLGK----TIGFASIITATLICTFYSILSGWF 116
           VAEL IGR+GQ+NP  A   +         GK     +G   ++  +LI +FY+I++GW 
Sbjct: 65  VAELTIGRYGQSNPIRAFRSVWPQ------GKWGAILLGVIGMVVVSLILSFYAIVAGWL 118

Query: 117 VSFTLAPIARLVGMQDIALWLTSFSLERNLLFTLIFILMVVLVIRQGVQQGIEAWSKRLM 176
           V         L+G    + WLTSFS ERNL+  + F+++ + V+R GV  GIE WS RLM
Sbjct: 119 VGSLFGSGLTLIGADSASQWLTSFSTERNLILMVSFMVLTMFVVRNGVANGIEKWSTRLM 178

Query: 177 PLLLAILILGVAYILTQPGASQGLNALLVPDFGRIWEPQVLIGALGQTFFSLTVGTGAMM 236
           PLL  +  L   YI TQ GA  GL   LVPD    + P V++ A+GQ FFSL++G   M 
Sbjct: 179 PLLFVLFGLLTVYIFTQEGALDGLKMYLVPDLSH-FTPDVVVSAMGQAFFSLSLGVCVMT 237

Query: 237 VYGAYLNRQENLAKLTAYVTLTDTSVAFLAALMIIPAMYVAQHNGVQIFAADGSLLNADT 296
            YG+YLN++ NL K  A V L DT VAF+A LM++PAM+VA+HNGV+IF++ G LLN+DT
Sbjct: 238 TYGSYLNKEANLPKTAAQVALIDTGVAFIAGLMVLPAMFVAKHNGVEIFSSSGELLNSDT 297

Query: 297 LVFTVLPALFDSLGGLAGQLIAIVFFILMTIAGLTSAISIVEVPTSYMVEKTEIQRHSAT 356
           LVFTVLPA+FD++G + G +I I+FF+LM IA LTS+IS++EVP +  VE+ + +R SA 
Sbjct: 298 LVFTVLPAMFDTMGAV-GAVIGIIFFLLMIIAALTSSISMLEVPVACAVEELQQKRSSAV 356

Query: 357 YLVGGGIALLATIMVFNFDALFALVITLTTERAQPFIALGIALYTGWVWHRNSLLKAIAA 416
             +GG + +++ ++V NF +LF LVI  TT  +QP IAL I L  GW+W+RN +L  +  
Sbjct: 357 LWIGGLVTIISGVIVLNFSSLFGLVINFTTVYSQPIIALLITLIAGWIWNRNQILSELKQ 416

Query: 417 QEGAKLDGLFWRIWPVYVKYVCPVLILAI 445
                 + LFW+IWP YV+ VCPVL+L +
Sbjct: 417 GCPDIENSLFWKIWPWYVRLVCPVLMLMV 445