Pairwise Alignments

Query, 452 a.a., sodium:neurotransmitter symporter (RefSeq) from Shewanella loihica PV-4

Subject, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis S2

 Score =  174 bits (441), Expect = 6e-48
 Identities = 132/462 (28%), Positives = 228/462 (49%), Gaps = 47/462 (10%)

Query: 9   FSSRIGFIMAAAGSAVGVGNIWGFPTQAATHGGGAFLLVYLVLIFLLGYPMLVAELMIGR 68
           ++S++GFI+AA GSAVG+GNIW FP  A  +GGGAFL+ Y V +  +G  ++V EL +G 
Sbjct: 6   WASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLELALGH 65

Query: 69  HGQTNPADAMAKLGSSKLSRNLGKTIGFASIITATLICTFYSILSGW------------- 115
             + +   A+ +LG +       + IG+ +I TA +I T+Y+ +  W             
Sbjct: 66  STKGSAPLALRRLGKNF------EWIGWLAIATAFIITTYYTAIIAWALVYLVKLFMVGF 119

Query: 116 ---FVSFTLAPIARLV-GMQDIALWLTSFSLERNLLFTLIFILMVVLVIRQGVQQGIEAW 171
              F  F  + I  L  G  D+      F+L   +   LI+ +  + V+  GV++G+E  
Sbjct: 120 PTDFGGFFFSDILALSSGHGDLG----GFNLPILVGLALIWGVNYI-VVNSGVRKGLEKA 174

Query: 172 SKRLMPLLLAILILGVAYILTQPGASQGLNALLVPDFGRIWEPQVLIGALGQTFFSLTVG 231
           ++ LMP+L  +++  V   +T PG   G+   L P+F  +  P+V I A  Q FF+L++G
Sbjct: 175 NEILMPVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTLSLG 234

Query: 232 TGAMMVYGAYLNRQENLAKLTAYVTLTDTSVAFLAALMIIPAM-YVAQHNGVQIFAADGS 290
            G M+ Y +YL ++ +L      ++L +   +FLA   +   + Y+A   GV I      
Sbjct: 235 FGIMVAYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPISEV--- 291

Query: 291 LLNADTLVFTVLPALFDSLGGLAGQLIAIVFFILMTIAGLTSAISIVEVPTSYMVEKTEI 350
           +  +  L F   P     + G  G ++A +FFI + +AG++S++S+VE   S +++K  +
Sbjct: 292 VTQSIGLAFVAFPQALSLMPG--GIILAAIFFIALFVAGISSSVSLVESTASAVIDKFNL 349

Query: 351 QRHSATYLVGGGIALLATIMVFN-----FDALFALVITLTTERAQPFIALGIALYTGWVW 405
            RH A   V       + I   N      D++   +   T     P +A+   + + W++
Sbjct: 350 PRHKAASAVIATSFFASLIYATNAGLYWLDSVDHYINWFTI----PLVAVLEIIVSIWIF 405

Query: 406 HRNSLLKAIAAQEGAKLDGLFWRIWPVYVKYVCPVLILAIIL 447
             + L K I       L G FW+    +     P+ ++ +IL
Sbjct: 406 KGSKLEKYIDNLSEYNL-GSFWKF---FAGIFSPLFLIYMIL 443