Pairwise Alignments

Query, 198 a.a., phage integrase family protein (RefSeq) from Shewanella loihica PV-4

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 21/165 (12%)

Query: 33  DLMQLALLNLAIDSKLRASDLLKLHVYDVS-SQGVIYERVQCIQQKTGTDVHYEITPRTQ 91
           +L   A+L L   + LR ++L+ L + ++S  QGV+      +  K G +    + P  +
Sbjct: 136 ELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVR-----VMGKGGKE---RLVPMGE 187

Query: 92  QSISRWIFSASLEASSFL---------FPSSRRSGQPISYSFYRSIIRNWAAKLGLNADY 142
            +I  WI +   +  S L         FPSSR  GQ ++   +   I+++A   G++ + 
Sbjct: 188 NAIE-WIETFLQQGRSLLLGEQTSDIVFPSSR--GQQMTRQTFWHRIKHYAVIAGIDVEK 244

Query: 143 YGTHSMRRTKATLIYARTKNIRAVQILLGHSKVDNTIRYLGVELE 187
              H +R   AT +     ++R VQ+LLGHS +  T  Y  V  E
Sbjct: 245 LSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATE 289