Pairwise Alignments

Query, 291 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

Subject, 303 a.a., glycine cleavage system transcriptional activator, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  164 bits (414), Expect = 3e-45
 Identities = 107/289 (37%), Positives = 152/289 (52%), Gaps = 6/289 (2%)

Query: 2   RKIPPLRALQVFEAAARLQHFSRAAQELCITQSAVSHQVRLLEEHFALPLFRREGRSLRL 61
           R++PPL A++ FEAAAR   F+RAA+EL +TQ+AVSHQ++ LE+   L LFRR+ RSL L
Sbjct: 3   RRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSLLL 62

Query: 62  TDKGEQLFQETARIFNELGELNLRLLGEKP-EALRLAVYSSFAVKWLIPRLSGFRRLHPG 120
           T++G+  F +   IF +L +   RLL      +L +++  SFA++WL+PRLS F   +P 
Sbjct: 63  TEEGQSYFLDIKDIFIQLADATDRLLARSAIGSLTVSMSPSFAIQWLVPRLSKFSEKNPE 122

Query: 121 IQVRLDMI-TEDPVLSHSSADMFITGQQDQKGYWQQLLHAERLIPVCSPELISSSDKLDL 179
           I VR+  + TE   L+         G  +  G     L  E LIPVCSP L++    L  
Sbjct: 123 IDVRIKAVDTEASSLTDDVDVAIYYGLGNWPGLRADKLRNEVLIPVCSPMLLNGPKPLSK 182

Query: 180 DWLSTQQLLTVDEGPLGLDWQRWFEHHRVAQPEEEQQQLFSHVLMAIEAAIAGQGVALAS 239
                   L  D      DWQ WF    +      Q  +FSH  + ++AA  GQGVAL  
Sbjct: 183 PEDLKHHTLLHDMS--RHDWQAWFRQCGITDINVNQGPIFSHSSLVLQAAAHGQGVALGY 240

Query: 240 DFMVLDDIAKQRLVALPFAGIDTGFEFNFL-CKQRRLQEPAIAAFVHWL 287
             +   DI   RLV  PF  +    +  +L C+Q   +   + AF  W+
Sbjct: 241 SVLARPDIKAGRLVC-PFQEVLVSKDAYYLVCQQNHAELGKVVAFREWM 288