Pairwise Alignments

Query, 180 a.a., NusG antitermination factor (RefSeq) from Shewanella loihica PV-4

Subject, 180 a.a., transcription anti-termination protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  149 bits (375), Expect = 3e-41
 Identities = 79/182 (43%), Positives = 117/182 (64%), Gaps = 6/182 (3%)

Query: 1   MTEAKKRWYVVQAFSGYEGRVCKSLLEHIKMHGMEHYFGEVLVPTEEVVEMRAGQRRKSE 60
           M E +K+WYV++A SG E +V + L   +K   +  Y  +VL+PTE+V ++R G++   E
Sbjct: 1   MAEIEKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKE 60

Query: 61  RKFFPGYVLVQMEMNDESWHLVKSIPRVMGFIGGTSDRPAPISDREADAIL---QRLQET 117
           R + PGYVLV+  +  E  H +++ P V+GF+GG S++P P+   E + IL     LQET
Sbjct: 61  RSYLPGYVLVEAALVGEVAHHLRNTPNVIGFLGG-SEKPVPLRQSEVNRILGTVDELQET 119

Query: 118 TESPTHRVMFEPGEVVRVTDGPFADFNGTVEEVDYEKNRVKVSVMIFGRSTPVELDFSQI 177
            E     + +  GE V+VT GPF+ F+G +EEV+ EK ++KV V IFGR TP+EL F Q+
Sbjct: 120 GEE--LNIPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQV 177

Query: 178 EK 179
           EK
Sbjct: 178 EK 179