Pairwise Alignments

Query, 864 a.a., methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq) from Shewanella loihica PV-4

Subject, 654 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  560 bits (1444), Expect = e-164
 Identities = 298/612 (48%), Positives = 420/612 (68%), Gaps = 8/612 (1%)

Query: 236 QENSRIKQALDVCRANVMVADADYNIIYLNDSVTQMLKDNEQTLQQTLTKFNTNSLLGSN 295
           +E  R  Q LD  R N M+AD+D NIIY N +V  ML + E  +++ L +F+   ++GSN
Sbjct: 18  EERQRYFQLLDNSRNNFMIADSDRNIIYANKAVLNMLSEAEADIRKQLPQFSVARVIGSN 77

Query: 296 IDIFHQNPAHQRKMLDRLTGSYDTSIQVAGLDFTLIATPVFE-NGVRTGTVVEWQDVTEK 354
           IDIFH NPAHQR ML+RLT S+   I +    F LI TP+   +    GT VEW D TE 
Sbjct: 78  IDIFHVNPAHQRNMLERLTQSHTAQISIGKRIFKLILTPIISRDNKHLGTGVEWIDRTES 137

Query: 355 LAKEAKERQLAAENARIKQALDNVSSNTMVADADLNIIYMNKAVSQMFKQAQNDIAKDLP 414
           +  E   +       RI +AL+N S+N M+ADA+  IIYMN++V  M ++++++I + LP
Sbjct: 138 IDAERATQ-------RILEALNNTSTNVMIADANRTIIYMNRSVEAMLRRSESEIRQVLP 190

Query: 415 NFDASNLMGVNIDNFHKNPSHQRNLLKTLTTTYTSQLKVGGRTFQVVANPIRDPNGESIG 474
           +F    ++G ++D FH+NP+HQ +LL  L   Y SQ++V    F++ A+PI   +GE +G
Sbjct: 191 HFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYESQIQVASCHFRLTASPIILTSGERLG 250

Query: 475 TVVEWADRTAEVAIEHEIDSIIGAASKGDLSLRVGTQDKEGFFLNLSNGLNRLVGIADQV 534
           +VVEW DRT EV +E EI  I+ AA+ GD S RV +  K+GFFL L+N LN L+  +D+ 
Sbjct: 251 SVVEWLDRTEEVQVEQEIARIVAAAAAGDFSQRVDSHGKQGFFLMLANSLNSLIETSDRG 310

Query: 535 IGDVVNMFDGLAKGDLNRQIQGEYQGQFGKLQADANATAAKLTEVLDGINQSANTVTSGA 594
           + DV  +   +A+GDL  +I  EY+G F  L+  +N TA KL+ ++  I ++A+T+ + +
Sbjct: 311 LQDVARVLMAMAEGDLTTRIYNEYEGTFNDLKNYSNQTAEKLSYMIRDIQKAADTINTAS 370

Query: 595 EEIAQGNADLSQRTEEQAASLEETASSMEEMTATVTQSAQNATVANQLAQEANTKAAHGG 654
            EIAQGNADLS RTEEQA+SLEET++SMEE+T TV  +A NA+ AN LA +A   A  GG
Sbjct: 371 SEIAQGNADLSSRTEEQASSLEETSASMEELTGTVKLNADNASQANALASKAADVAEDGG 430

Query: 655 KVVEQAVTAMEAINESSKRIADIIGVIDEIAFQTNLLALNAAVEAARAGEQGRGFAVVAG 714
           ++++Q V  M +INES+++IADIIGVID IAFQTN+LALNAAVEAARAGEQGRGFAVVA 
Sbjct: 431 ELIQQVVQTMASINESARKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAS 490

Query: 715 EVRNLAQRSAGAAKEIKELIRDSVTKVTDGTQLVNQSGETLEDIVQAVTKVADMISQISI 774
           EVR+LAQRSA AAK+IK LI DSV+K+  G  LV +SG+T+++IV A+ +V D++++I+ 
Sbjct: 491 EVRSLAQRSANAAKDIKALISDSVSKIDSGNNLVGKSGDTMKEIVIAIKRVNDIMAEIAS 550

Query: 775 ASDQQSAGIQEVNKAISQMDEMTQQNAALVEQVSAAGDAMAEQARNMKSQLGFFQSQAPM 834
           AS++Q+ GI E+ KA+ QMDEMTQQNAALVE+ +AA ++M  QA+ +   +  F+     
Sbjct: 551 ASNEQAIGIDEIGKAVVQMDEMTQQNAALVEEAAAAAESMQSQAQQLADSVANFKVDEET 610

Query: 835 HSGMTSAPLSLV 846
            S   +  L  +
Sbjct: 611 RSARHTTELKKI 622



 Score =  220 bits (561), Expect = 2e-61
 Identities = 180/665 (27%), Positives = 311/665 (46%), Gaps = 94/665 (14%)

Query: 92  EISQSLTQQWHANQGNQAQLRALEICQANVMLADPQGNINFLNQSLRQTLEKAESDIQQA 151
           +I  +  ++ H ++  Q   + L+  + N M+AD   NI + N+++   L +AE+DI++ 
Sbjct: 5   DIFGNTEERQHQDEERQRYFQLLDNSRNNFMIADSDRNIIYANKAVLNMLSEAEADIRKQ 64

Query: 152 IASFSVDTLIGTNMDTFHQQPSHQQNIIAKLQRPHSAQIKVGSRIFSLIASPVFDDKHQR 211
           +  FSV  +IG+N+D FH  P+HQ+N++ +L + H+AQI +G RIF LI +P+    ++ 
Sbjct: 65  LPQFSVARVIGSNIDIFHVNPAHQRNMLERLTQSHTAQISIGKRIFKLILTPIISRDNKH 124

Query: 212 IATVVEWQDKTEALAKADAENKLAQENSRIKQALDVCRANVMVADADYNIIYLNDSVTQM 271
           + T VEW D+TE++   DAE    +   RI +AL+    NVM+ADA+  IIY+N SV  M
Sbjct: 125 LGTGVEWIDRTESI---DAE----RATQRILEALNNTSTNVMIADANRTIIYMNRSVEAM 177

Query: 272 LKDNEQTLQQTLTKFNTNSLLGSNIDIFHQNPAHQRKMLDRLTGSYDTSIQVAGLDFTLI 331
           L+ +E  ++Q L  F+ + +LGS++DIFH+NPAHQ  +LD+L   Y++ IQVA   F L 
Sbjct: 178 LRRSESEIRQVLPHFSVDKILGSSMDIFHRNPAHQASLLDKLDRKYESQIQVASCHFRLT 237

Query: 332 ATP-VFENGVRTGTVVEWQDVTEKLAKEAKERQLAAENAR--IKQALDNVSSN---TMVA 385
           A+P +  +G R G+VVEW D TE++  E +  ++ A  A     Q +D+        M+A
Sbjct: 238 ASPIILTSGERLGSVVEWLDRTEEVQVEQEIARIVAAAAAGDFSQRVDSHGKQGFFLMLA 297

Query: 386 DADLNIIYMNKAVSQMFKQAQNDIAKDLPNFDASNLMGVNIDNFHKNPSHQRNLLKTLTT 445
           ++      +N  +    +  Q D+A+ L      +L    I N ++      N LK  + 
Sbjct: 298 NS------LNSLIETSDRGLQ-DVARVLMAMAEGDLT-TRIYNEYEGTF---NDLKNYSN 346

Query: 446 TYTSQLKVGGRTFQVVANPIRDPNGESIGTVVEWADRTAEVAIEHE-----IDSIIG--- 497
               +L    R  Q  A+ I   + E      + + RT E A   E     ++ + G   
Sbjct: 347 QTAEKLSYMIRDIQKAADTINTASSEIAQGNADLSSRTEEQASSLEETSASMEELTGTVK 406

Query: 498 -----AASKGDLSLRVGTQDKEGFFLNLSNGLNRLVGIADQV--IGDVVNMFDGLAKGD- 549
                A+    L+ +     ++G  L +   +  +  I +    I D++ + DG+A    
Sbjct: 407 LNADNASQANALASKAADVAEDGGEL-IQQVVQTMASINESARKIADIIGVIDGIAFQTN 465

Query: 550 ---LNRQIQGEYQGQFGK------------LQADANA----------------------- 571
              LN  ++    G+ G+             Q  ANA                       
Sbjct: 466 ILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSANAAKDIKALISDSVSKIDSGNNLVG 525

Query: 572 -----------TAAKLTEVLDGINQSANTVTSGAEEIAQGNADLSQRTEEQAASLEETAS 620
                         ++ +++  I  ++N    G +EI +    + + T++ AA +EE A+
Sbjct: 526 KSGDTMKEIVIAIKRVNDIMAEIASASNEQAIGIDEIGKAVVQMDEMTQQNAALVEEAAA 585

Query: 621 SMEEMTATVTQSAQNATVANQLAQEANTKAAHGG--KVVEQAVTAMEAINESSKRIADII 678
           + E M +   Q A   +VAN    E    A H    K + Q +  +  +    K +   +
Sbjct: 586 AAESMQSQAQQLAD--SVANFKVDEETRSARHTTELKKIPQKIPTLARVTPKPKAMTPKL 643

Query: 679 GVIDE 683
              D+
Sbjct: 644 NKADQ 648