Pairwise Alignments

Query, 239 a.a., DNA polymerase III subunit epsilon (RefSeq) from Shewanella loihica PV-4

Subject, 181 a.a., exonuclease (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (307), Expect = 4e-33
 Identities = 72/174 (41%), Positives = 100/174 (57%), Gaps = 8/174 (4%)

Query: 52  MDFETTGLNVDKDDIVSIGTVPFTLRRIFLNRAQHWTVRPREQLAEESVIIHGITHSDIL 111
           MD E TGL+  KD I+SIG VP     I L+ AQ   V+ R  + + S IIHGI  + + 
Sbjct: 1   MDLEMTGLDPFKDQILSIGLVPIENGAIPLSHAQQKLVQIRGSVGQ-SAIIHGILDNHLT 59

Query: 112 DAPDLSAIFEQVLEQMAGKIMVVHYQAIERLFLERALIRRIHQGIEFPLIDTMALESEIQ 171
            A  +       +EQ  G+++V H+  ++  FL++ ++   HQ +  P IDT+ LE +  
Sbjct: 60  QAVSIEEAMAWFMEQTRGRVLVAHHSPLDCRFLQQDILTIYHQAVLLPAIDTLVLEKQRL 119

Query: 172 KRQHGGLLQRLKGDKPGSVRLGQSRSRYGLPSYPPHNALTDAIATAELLQAQIA 225
            R+H  L       K GS+RLG  R RYGLP Y  H+ALTDA+A AELL AQ+A
Sbjct: 120 LREHSVL-------KEGSLRLGACRERYGLPIYGAHSALTDALACAELLLAQVA 166