Pairwise Alignments

Query, 366 a.a., DNA polymerase III, beta subunit (RefSeq) from Shewanella loihica PV-4

Subject, 368 a.a., DNA polymerase III subunit beta from Herbaspirillum seropedicae SmR1

 Score =  330 bits (847), Expect = 3e-95
 Identities = 176/361 (48%), Positives = 238/361 (65%), Gaps = 1/361 (0%)

Query: 7   RDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAELQGEVQEG 66
           RD LL+PLQ+VSG VERRH LPILAN+L+   G  +    TD+EV++   A++    +  
Sbjct: 8   RDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADVGSGSEAT 67

Query: 67  RTTVPAKKFLDIVKSLPDQVELKIEQQDNRLLLRSGRSRFTLATLPAEEYPNV-DAFQAD 125
            TTV A+K LDI+++LPD  E+ I   + RL ++SG+SRF L TL AEE+P V  A   +
Sbjct: 68  ATTVAARKLLDILRALPDSGEVSISLSNKRLTVQSGKSRFALQTLAAEEFPTVAQAEHYN 127

Query: 126 IEFTLKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALSHRMVQ 185
            +  L Q TLK L +   F+MA QD+RYYLNGLLL  EG  + A+ATDGHRLA      +
Sbjct: 128 AQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKNVIAVATDGHRLAFCQVETE 187

Query: 186 DSLPEKQVIVPRKGVLELQRLFEGEDLDVTLSIGENAIRATTQSAVFTSKLVDGRFPDYR 245
           +  P ++VI+PRK ++ELQRL +  D +V L I  N ++ T       SKLV+G+FPDY 
Sbjct: 188 EDFPRQEVIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISKLVEGKFPDYT 247

Query: 246 RVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLEQNLIKITANNPEQEEAEEI 305
           RV+PKG       SR+ L ++L RA+I++++KF+GVR  +    +KI++ N +QEEA E 
Sbjct: 248 RVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISSTNADQEEAVEE 307

Query: 306 LDIEYDNAPLEIGFNVSYLLDVLNNLPSDDVRITLIDGNSSALIENHVEEDSMYVVMPMR 365
           L+I+Y    ++IGFNVSYLLDVLNNL +D V I L D NSSALI      D  YVVMPMR
Sbjct: 308 LEIDYGGDTVDIGFNVSYLLDVLNNLKNDYVNIALGDANSSALITIPDNADFKYVVMPMR 367

Query: 366 L 366
           +
Sbjct: 368 I 368