Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 193 a.a., RNA polymerase sigma-H factor AlgT from Pseudomonas fluorescens FW300-N2E2

 Score = 42.4 bits (98), Expect = 5e-09
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 26  VRDEEAALDLVQDAMMRLAEKYGD-RPAEELPMLFQRILQNAIRDYYRRSKVRSMWTTLL 84
           V D   A D+ Q+A ++     G+ R          RI  N  ++Y            L+
Sbjct: 41  VHDTHEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKNY------------LV 88

Query: 85  SSLTPGDDEDSDPLDTLEVEGKAG----DSPEGSLEQSQVLAVIEAEISRLPGRQREAFL 140
           S      D D    D    +G  G    +SPE +L + ++   +   I +LP   R A  
Sbjct: 89  SRGRRPPDSDVSSEDAEFYDGDHGLKDLESPERALLRDEIEGTVHRTIQQLPEDLRTALT 148

Query: 141 MRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAAALK 179
           +R ++ +   + A+ M C  G+V++   RA   +  AL+
Sbjct: 149 LREFDGLSYEDIASVMQCPVGTVRSRIFRAREAIDKALQ 187