Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 171 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog from Pseudomonas stutzeri RCH2

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 19/143 (13%)

Query: 30  EAALDLVQDAMMRLAEKYGDRPAEELPMLF-QRILQNAIRDYYRRSKVRSMWTTLLSSLT 88
           + A DL QD  +R+  K  D  A   P  +   I +  + +++RR ++   +        
Sbjct: 35  QRAADLAQDTFVRVMTKDEDMGAIREPRAYLHTIAKGLLINHWRRRQIEQAY-------- 86

Query: 89  PGDDEDSDPLDTLEVEGK-AGDSPEGSLEQSQVLAVIEAEISRLPGRQREAFLMRYWEDM 147
                    LD L ++ +    SPE      + L  I+A +++LP + R AFLM   + M
Sbjct: 87  ---------LDALALQPELVAPSPESQALIVETLLQIDAMLAQLPAKVRRAFLMSQLQGM 137

Query: 148 DVAETAAAMGCSEGSVKTHCSRA 170
             A  AA +G SE  VK + ++A
Sbjct: 138 TYAAIAAELGVSERMVKKYMAQA 160