Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 55/169 (32%), Positives = 67/169 (39%), Gaps = 23/169 (13%)

Query: 17  RAFKQALFAVRDEEAALDLVQDAMMR-LAEKYGDRPAEELPMLFQRILQNAIRDYYRRSK 75
           R F  +L   RD   A DLVQ A  R LA      P         RIL+N   D  RR K
Sbjct: 20  RRFAISLCGSRD--VADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWIDQVRRQK 77

Query: 76  VRSMWTTLLSSLTPGDDEDSDPLDTLEVEGKAGDSPEGSLEQSQVLAVIEAEISRLPGRQ 135
                       T G  +D       E    AG S E   E    L  +   I+ LP  Q
Sbjct: 78  ------------TAGVQDD-----ITERHDIAGSSGERETEARLTLKTVAEAITELPDEQ 120

Query: 136 REAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAAALKAKGIT 184
           RE  L+   E++   E A  MG   G+V +   RA  +LA   +A GIT
Sbjct: 121 REVVLLVCVEELSYREAADVMGIPIGTVMSRLMRARRSLA---EAAGIT 166