Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 227 a.a., RNA polymerase sigma factor from Sinorhizobium meliloti 1021

 Score = 44.7 bits (104), Expect = 1e-09
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 10/166 (6%)

Query: 16  RRAFKQALFAVRDEEAALDLVQDAMMRLAEKYGD-RPAEELPMLFQRILQNAIRDYYRRS 74
           R+ ++ A   +R++  A D++Q+A +R   ++ D R    +     RI+ N      R+ 
Sbjct: 31  RKLYRIARSILRNDSDAEDVLQEAYVRAFTRFEDFRGDAAITTWLARIVINEALGRLRKG 90

Query: 75  KVRSMWTTLLSSLTPGDDEDSDPLDTLEVEGKAGDS-PEGSLEQSQVLAVIEAEISRLPG 133
           + +      +          S   + +     +G S PE ++ Q Q+L ++E     LP 
Sbjct: 91  RRQMRLAKYM--------RQSQEAEIIAFPLNSGISDPEKTMAQRQILDLVERLTDDLPD 142

Query: 134 RQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAAALK 179
             R  F++R  E +D  E AA +G    + +T   RA   L   L+
Sbjct: 143 TYRTVFVLRVIEGLDNEEAAALLGLKPETARTRLHRARRILKEQLE 188