Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 187 a.a., RNA polymerase sigma70 factor from Burkholderia phytofirmans PsJN

 Score =  273 bits (699), Expect = 1e-78
 Identities = 138/187 (73%), Positives = 162/187 (86%), Gaps = 2/187 (1%)

Query: 1   MATPRELSDFLAGVERRAFKQALFAVRDEEAALDLVQDAMMRLAEKYGDRPAEELPMLFQ 60
           MA+ +EL+DFLAGVERRAFKQ ++AVRD++A+LD+VQDAM++LAEKYGDRPA ELP+LFQ
Sbjct: 1   MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60

Query: 61  RILQNAIRDYYRRSKVRSMWTTLLSSLTPGDDEDSDPLDTLEV-EGKAG-DSPEGSLEQS 118
           RILQNA+ DY+RR+KVR+ W +L SSL   DDED DPL+T E  +G AG +S E  LE+ 
Sbjct: 61  RILQNAMHDYFRRAKVRNTWVSLFSSLGNADDEDFDPLETFEAQQGSAGSESNEQKLERE 120

Query: 119 QVLAVIEAEISRLPGRQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAAAL 178
           QVL +I+ EI +LP RQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLA AL
Sbjct: 121 QVLQLIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAQAL 180

Query: 179 KAKGITL 185
           KAKGITL
Sbjct: 181 KAKGITL 187