Pairwise Alignments

Query, 828 a.a., ribonuclease R from Dechlorosoma suillum PS

Subject, 808 a.a., exoribonuclease II (RefSeq) from Shewanella amazonensis SB2B

 Score =  754 bits (1946), Expect = 0.0
 Identities = 405/821 (49%), Positives = 534/821 (65%), Gaps = 39/821 (4%)

Query: 12  NDPFFERECQKYEIPLPSREYTMQLLQDQGRPVSFDQLVALLDISRDEE-DLFQRRLNAM 70
           NDP FERE +KY+ P+PSRE+ ++ L+ Q  P   D +   L I  +E  +  +RRL AM
Sbjct: 3   NDPHFEREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLRAM 62

Query: 71  ERDGQLLRNRKNSYILPEKADLIPGKVEGHPDGFGFVKPDDGSDDLFLEPKQMDKVLHGD 130
           ERDG+L+  R   Y LPE+ DL+ G V GH DGFGF +PD+G DDLF+  + M    HGD
Sbjct: 63  ERDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFHGD 122

Query: 131 RVLVRCIGLDRRGRREATIVEVLERANTRLVGRLMEEHGIQFVVAENKRISQDILIPPTA 190
           +VL +  G+DRRGRR+A IV +L   +  LVGR   + G+ FVVA++KRI  +ILI   A
Sbjct: 123 KVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILI---A 179

Query: 191 MTDKRAKLKARPGNVVMVEILEQPSRYSQPIGRIVEILGNYADPGMEIEIALRKHDLPFE 250
             DK     AR G+VV++E+  +P RY +  G++ E+LG    PGMEIEIALR +DLP +
Sbjct: 180 NEDKNG---ARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQ 236

Query: 251 FSKEAQAENKAVPDKVKKSDFKGREDLRELPLVTIDGETARDFDDAVFCE-KVGRGWRLV 309
           +S   + + + +PD V   D +GR DLRELPLVTIDGE ARDFDDAV+ E K G GWRL 
Sbjct: 237 WSAVIEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLW 296

Query: 310 VAIADVSHYVRPGMALDQEAYDRGNSVYFPRRVIPMLPEKLSNGICSLNPDVERLAMVCD 369
           VAIADVSHYVR   ALD+EA  RGNSVYFP +VIPMLPEKLSNG+CSLNP V+RL MV +
Sbjct: 297 VAIADVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAE 356

Query: 370 MNISATGSIGKYRFYPAVFRSHARLTYNQVWGWLSGQSQPENEVHQALQPHLQNLYKLFQ 429
           M ISA G +  Y+FYPAV  SHAR TY QV   L G    +   H+AL PHL+ L +L+ 
Sbjct: 357 MTISAKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGGEVKDE--HKALFPHLKVLQELYL 414

Query: 430 VLLKARKKRGAIDFETVETQMLFNAQGKIENIVPVVRNDAHRLIEECMLAANVCASGFLH 489
            L + R +RGAI FET+ETQ +FN Q KI+ IVP  RN AH++IEECM+ ANV A+ F+ 
Sbjct: 415 CLDEQRAERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVI 474

Query: 490 EHKQACLYRVHQGPTPEKLENLRAFLGEFGFSLAGGDEPKAKDYAELLEKIQGRPDTQLL 549
           +HK   LYRVH+ P+ +KL   + FL E G S+ GG EP+  DY  L+ ++ GRPD +L+
Sbjct: 475 KHKGHVLYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELI 534

Query: 550 QTVMLRSLRQAQYAPENLGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLA-------- 601
           Q ++LRS+RQA Y P+N GHFGLA EAY+HFTSPIRRYPDL++HR I+ +LA        
Sbjct: 535 QVMLLRSMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEASE 594

Query: 602 ------GETYNPGKWEDIGLHCSGTERRADEATRDVDNWLKCFYMKERIGEEFEGTIAGV 655
                 G  Y   + + +G  CS TERRADEATRDV +WLKC +M++ +G+ F G IA V
Sbjct: 595 KWTADGGYHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIASV 654

Query: 656 AAFGIFVALDEVFVEGMVHVSELGEDYFHFEPAKHQMLGERSGKRFRLGDRLRVKLVRAD 715
            +FG+FV LDE+F++G+VH+S LG DYF ++P + +++GE SG+ +++GD + VK+   +
Sbjct: 655 TSFGLFVRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVASVN 714

Query: 716 LESGRIDFILAQEKKEGPAGDDEVVTWRKNTTGKPALGAAAPQGKPRAGSGGGKPGK--S 773
           L+  +ID    Q + E P          +   GK    A        A +G GKPGK  S
Sbjct: 715 LDDRQIDL---QMEGERPG---------RKKAGKKPTTARDRANLEGARTGNGKPGKGGS 762

Query: 774 APGGKAGGPGQGGHRGKSPAAAKTG-APKRSGKGGAKGGSK 813
                AGG   G    K  A AK G  PK++ +   K   +
Sbjct: 763 VRSQLAGGKLGGSETKKRDAKAKDGKKPKKAAEAKPKAAKR 803