Pairwise Alignments

Query, 828 a.a., ribonuclease R from Dechlorosoma suillum PS

Subject, 809 a.a., RNAse R (RefSeq) from Shewanella sp. ANA-3

 Score =  746 bits (1925), Expect = 0.0
 Identities = 396/814 (48%), Positives = 533/814 (65%), Gaps = 37/814 (4%)

Query: 13  DPFFERECQKYEIPLPSREYTMQLLQDQGRPVSFDQLVALLDISRDEE-DLFQRRLNAME 71
           DP FERE  KYE P+PSREY ++ L+ Q  P++ D +   L I  +E+ +  +RRL AME
Sbjct: 4   DPHFEREQDKYENPIPSREYIIEYLRSQKSPITRDSIAVALQIHDEEQLEALRRRLRAME 63

Query: 72  RDGQLLRNRKNSYILPEKADLIPGKVEGHPDGFGFVKPDDGSDDLFLEPKQMDKVLHGDR 131
           RDG+L+  R  SY LPEK DLI G V GH +G+GF KPD+G DDLF+  + M    HGD+
Sbjct: 64  RDGELVFTRGQSYGLPEKMDLISGTVLGHREGYGFFKPDEGGDDLFISNRDMLMYFHGDK 123

Query: 132 VLVRCIGLDRRGRREATIVEVLERANTRLVGRLMEEHGIQFVVAENKRISQDILIPPTAM 191
           VL +  G+DR+GRREA IV +++  +  +VGR   + G+ FV+A++KRI+Q+ILI   A 
Sbjct: 124 VLAQKAGMDRKGRREARIVRLIQPRSAAIVGRFHVDSGMAFVIADDKRITQEILI---AT 180

Query: 192 TDKRAKLKARPGNVVMVEILEQPSRYSQPIGRIVEILGNYADPGMEIEIALRKHDLPFEF 251
            D+     AR G+VV+VE+  +P R+ +  G++ E+LG    PGMEIEIALR +DLP  +
Sbjct: 181 EDRNG---ARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTW 237

Query: 252 SKEAQAENKAVPDKVKKSDFKGREDLRELPLVTIDGETARDFDDAVFCE-KVGRGWRLVV 310
           S   + + + +PD+V ++D  GR DLR+LPLVTIDGE ARDFDDAV+ E K   GWRL V
Sbjct: 238 SAVIEKKLRRIPDEVTEADKVGRVDLRDLPLVTIDGEDARDFDDAVYAEVKPSGGWRLWV 297

Query: 311 AIADVSHYVRPGMALDQEAYDRGNSVYFPRRVIPMLPEKLSNGICSLNPDVERLAMVCDM 370
           AIADVS+YVR   ALD EA  RGNSVYFP +VIPMLPEK+SNG+CSLNP V+RL MV +M
Sbjct: 298 AIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEM 357

Query: 371 NISATGSIGKYRFYPAVFRSHARLTYNQVWGWLSGQSQPENEVHQALQPHLQNLYKLFQV 430
            ISA G +  Y+FYPAV  SHAR TY QV   L G   P    H+AL PHLQ L  L+  
Sbjct: 358 TISARGKLSGYKFYPAVMHSHARFTYTQVAAMLEGG--PIAPEHEALFPHLQCLQSLYLA 415

Query: 431 LLKARKKRGAIDFETVETQMLFNAQGKIENIVPVVRNDAHRLIEECMLAANVCASGFLHE 490
           L + R +RGAI FET+ETQ +FN Q KI+ IVP  RN AH++IEECM+ ANV A+ F+ +
Sbjct: 416 LDEQRAERGAIAFETLETQFIFNDQRKIDKIVPRARNQAHKIIEECMILANVSAAKFVKK 475

Query: 491 HKQACLYRVHQGPTPEKLENLRAFLGEFGFSLAGGDEPKAKDYAELLEKIQGRPDTQLLQ 550
           HK   LYRVH+ P+ +KL N + FL E G S+ GG EP   DY  ++ +I  RPD +L+Q
Sbjct: 476 HKGEILYRVHESPSEQKLANFKEFLAERGLSMGGGLEPTPADYQNVMLQIADRPDAELIQ 535

Query: 551 TVMLRSLRQAQYAPENLGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVLA--------- 601
            ++LRS+RQA Y P+N GHFGLA E Y HFTSPIRRYPDL++HR I+ +LA         
Sbjct: 536 VMLLRSMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKEKGEANEK 595

Query: 602 -----GETYNPGKWEDIGLHCSGTERRADEATRDVDNWLKCFYMKERIGEEFEGTIAGVA 656
                G  Y   + + +G  CS TERRADEATRDV +WLKC +M++ +G+ FE  IA V 
Sbjct: 596 WTSDGGYHYQLDELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVT 655

Query: 657 AFGIFVALDEVFVEGMVHVSELGEDYFHFEPAKHQMLGERSGKRFRLGDRLRVKLVRADL 716
            FG+FV L+++F++G+VH+S LG DY+ F+P + +++GE +G+ +++GD + VK+   +L
Sbjct: 656 NFGLFVRLNDLFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQIYQVGDPVTVKVAAVNL 715

Query: 717 ESGRIDFILAQEKKEGPAGDDEVVTWRKNTTGKPALGAAAPQGKPRAGSGGGKPGKSAPG 776
           +  +ID ++  +  +G          R+ +         A +   R G+   K  KS   
Sbjct: 716 DDRQIDLVMLGDSGKG---------GRRKSAPSREKPMTARERVNREGAKMAKAAKSTGA 766

Query: 777 -GKAGGPGQGGHRGKSPAAAKTGAPKRSGKGGAK 809
             KAG    G  + KS A AK   PK+S K  AK
Sbjct: 767 KSKAGSDKAGASKSKSKAGAK---PKKSVKNSAK 797