Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

 Score =  539 bits (1388), Expect = e-157
 Identities = 272/493 (55%), Positives = 373/493 (75%), Gaps = 3/493 (0%)

Query: 1   MSREILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFR 60
           MS+E+LL+V++++ EK V   V+F ALE ALA+ATKKR  DE D+RV I+R  G YE+FR
Sbjct: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60

Query: 61  RWQVVADETYVNEFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRI 120
           RW VV DE + +   ++ L +AQ+++   ++GDV EE +E I+FGRI AQ AKQVI+Q++
Sbjct: 61  RWTVVDDEHFDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 121 RDAEREQILADFLERKEHIVSGTIKRMERGNAIIEAGK-IEALLPRDQMIPKENLRVGDR 179
           R+AER Q++  + +R   I+SGT+K++ R + I++ G   EALL R+ +I +E  RVG R
Sbjct: 121 REAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGAR 180

Query: 180 VKAFLLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAV 239
           V+A L  I    RGPQ+ILSRTAP+ +I+LF +EVPEI +GL+E+  A+RDPG RAKIAV
Sbjct: 181 VRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAV 240

Query: 240 KSNDPRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVV 299
           +S D R+DP G C+GMRG+RV AV+ E+ GERVDIV W ++PAQ VI A+APAEV++I+V
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAIIV 300

Query: 300 DEEKHSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVL 359
           DE+ H+MD+ V E NLA AIGRGGQNVRLAS+LTGW +N+MT+ + + K + ET      
Sbjct: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRN 360

Query: 360 FMEKLDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVLLTEA 419
           F+++LDVDEE+A +L++EGF++LEE+AYVP+ EML IE FDED VNELR RA++ LLT+A
Sbjct: 361 FIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKA 420

Query: 420 IVTEEQLEGVE--DSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDELTEITGIDADRA 477
           I  EE+L   +  + LLALDGMDK LA +LA  GV T +DLA+ ++D+L +I GID +RA
Sbjct: 421 IANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQSIDDLLDIDGIDEERA 480

Query: 478 KQLITNARSHWFE 490
            +LI  AR+HWFE
Sbjct: 481 GKLIMAARAHWFE 493