Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 537 a.a., transcription termination factor NusA from Rhodopseudomonas palustris CGA009

 Score =  427 bits (1097), Expect = e-124
 Identities = 223/467 (47%), Positives = 319/467 (68%), Gaps = 6/467 (1%)

Query: 4   EILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFRRWQ 63
           E+L + DA+AREK + + +V  A+E A+A A + R   E DV   ID   GE    R   
Sbjct: 9   ELLQIADAVAREKTIDRSIVIAAMEDAIAKAARARYGSETDVHAEIDPKKGELRLSRHML 68

Query: 64  VVADETYVNEFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRIRDA 123
           VV  E   N   ++ L +AQ+ + G ++GD I ++L P+++GRI AQ+AKQVI+Q++R+A
Sbjct: 69  VV--EQVENPANQISLKDAQRANPGAQIGDTIADTLPPLEYGRIAAQSAKQVIVQKVREA 126

Query: 124 EREQILADFLERKEHIVSGTIKRMERGNAIIEAGKIEALLPRDQMIPKENLRVGDRVKAF 183
           ER++   +F +R   IV+G +KR+E G+ I++ G+ EA++ RD+M+P+E+ R GDRV+A+
Sbjct: 127 ERDRQYMEFKDRIGDIVNGVVKRVEYGSVIVDLGRGEAIIRRDEMLPRESFRNGDRVRAY 186

Query: 184 LLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAVKSND 243
           +  + R  RGPQI LSRT P+F+ KLF  EVPEI DG++EIKA ARDPG RAKI V S D
Sbjct: 187 VFDVRRETRGPQIFLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGVVSRD 246

Query: 244 PRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVVDEEK 303
             VDP+G CVGMRG+RV AV NEL GE++DI+ WS D A FV+ ALAPAEVS +V+DE++
Sbjct: 247 SSVDPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKVVIDEDR 306

Query: 304 HSMDVVVDEAN--LAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVLFM 361
             ++VVV + N  L++AIGR GQNVRLAS+LTGW+I+++T+ E  ++ +A+   T   FM
Sbjct: 307 ERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTESEESERRQADFEKTTRAFM 366

Query: 362 EKLDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVL-LTEAI 420
           + L+VDE V  +L  EGF+++EE+A V   E+  IE FDE+T  EL+ RA   L   E+ 
Sbjct: 367 DALNVDEVVGQLLASEGFTSVEELALVDPRELASIEGFDEETAAELQTRASEYLDRIESE 426

Query: 421 VTEEQLE-GVEDSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDEL 466
           +   +LE GVED+L  + G+   +  K     VKT++DLA  A D+L
Sbjct: 427 LEARRLELGVEDALKDVPGVTSKMLVKFGENDVKTVEDLAGCATDDL 473