Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 541 a.a., transcription elongation protein NusA from Phaeobacter inhibens DSM 17395

 Score =  421 bits (1081), Expect = e-122
 Identities = 226/465 (48%), Positives = 309/465 (66%), Gaps = 2/465 (0%)

Query: 4   EILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFRRWQ 63
           E+L   +A+AREK +   +V  A+E +LA A K R   E D+RV IDR TG     R   
Sbjct: 10  ELLQTAEAVAREKMIDPGLVVDAMEESLARAAKSRYGSEMDIRVSIDRKTGRATFTRVRT 69

Query: 64  VVADETYVNEFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRIRDA 123
           VV D+   N   E+ + +A++      VGDV  E + P++ GRI AQ+AKQVILQ++R+A
Sbjct: 70  VVEDDALENYQAELTVEQAKQYMADPSVGDVFVEEVPPVEMGRIAAQSAKQVILQKVREA 129

Query: 124 EREQILADFLERKEHIVSGTIKRMERGNAIIEAGKIEALLPRDQMIPKENLRVGDRVKAF 183
           ER++   +F +R   I++G +KR E GN I++ G  EA+L R++ I +E+ R  DR++ F
Sbjct: 130 ERDRQYEEFKDRAGTIINGLVKREEYGNVIVDVGAGEAILRRNEKIGRESYRPNDRIRCF 189

Query: 184 LLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAVKSND 243
           +  + R  RGPQI LSRTAPEF+ +LF +EVPEI DG++EIKA ARDPG RAKIAV S D
Sbjct: 190 IKDVRREPRGPQIFLSRTAPEFMAELFKMEVPEIYDGVIEIKAVARDPGSRAKIAVISYD 249

Query: 244 PRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVVDEEK 303
             +DP+G CVGMRG+RV AV NEL GE++DI+ W++D   F++ AL PAEVS +V+DEE 
Sbjct: 250 GSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLDEEA 309

Query: 304 HSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVLFMEK 363
             ++VVV E  L++AIGR GQNVRLAS+LT  +I++MT+EE   + + E  A   LFME 
Sbjct: 310 GKIEVVVPEEQLSLAIGRRGQNVRLASQLTALDIDIMTEEEESARRQKEFEARTKLFMET 369

Query: 364 LDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVL--LTEAIV 421
           LD+DE  A +L+ EGF+ LEEVAYV L E+L I+  DE T  EL+ RA + L    +A +
Sbjct: 370 LDLDEFFAQLLVSEGFTNLEEVAYVELDELLVIDGVDEGTAQELQARAADYLEAQAKAAI 429

Query: 422 TEEQLEGVEDSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDEL 466
              +  GVEDSL+  DG+   +   LA  G+KTL+D A  A  EL
Sbjct: 430 DAARALGVEDSLIDFDGLTPQMVEALAKDGIKTLEDFATCADWEL 474