Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 543 a.a., NusA antitermination factor from Sphingomonas koreensis DSMZ 15582

 Score =  431 bits (1108), Expect = e-125
 Identities = 232/516 (44%), Positives = 331/516 (64%), Gaps = 33/516 (6%)

Query: 4   EILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFRRWQ 63
           E++ + +++A EK + K +V  A+E A+  A K R   E D+R  +D  TG+    R W+
Sbjct: 11  ELIAIANSVASEKMIDKSIVIEAMEEAIERAAKNRYGVENDIRAKLDPQTGD---LRLWR 67

Query: 64  VVADETYVNE-FLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRIRD 122
           VV     V++ F ++ L  AQK  +  +VGD I + L PI+FGRI AQA+KQ+I Q++RD
Sbjct: 68  VVEVVEAVDDYFKQVDLKGAQKLQKDAKVGDFIVDPLPPIEFGRIQAQASKQIIFQKVRD 127

Query: 123 AEREQILADFLERKEHIVSGTIKRMERGNAIIEAGKIEALLPRDQMIPKENLRVGDRVKA 182
           AERE+   +F +R+  I++G +KR+E G+ +++ G+ E ++ RD  IP+E +RVGDRV++
Sbjct: 128 AERERQFEEFKDRQGEIITGVVKRVEFGHVVVDLGRAEGVIRRDAQIPREVVRVGDRVRS 187

Query: 183 FLLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAVKSN 242
            +L++ R  RGPQI LSR  P+F+ KLF  EVPEI DG++EIKAAARDPG RAKI V S+
Sbjct: 188 LILKVVRETRGPQIFLSRAHPDFMKKLFAQEVPEIYDGIIEIKAAARDPGSRAKIGVISH 247

Query: 243 DPRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVVDEE 302
           D  +DP+G CVGM+G+RV AV  E+ GE++DI+ WS D A FV+ AL PA V+ +V+DEE
Sbjct: 248 DSSIDPVGACVGMKGSRVQAVVQEMQGEKIDIIPWSPDTATFVVNALQPANVARVVIDEE 307

Query: 303 KHSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVLFME 362
              ++VVV +  L++AIGR GQNVRLAS+LTG  I+++T+ +S +K +AE  A   +F  
Sbjct: 308 DDRIEVVVPDDQLSLAIGRRGQNVRLASQLTGKAIDILTETDSSEKRQAEFVANSEMFQN 367

Query: 363 KLDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVL--LTEAI 420
           +LDVDE +A +L+ EGFS LEEVAYV L E+  IE FDED   EL++RA   L    EA 
Sbjct: 368 ELDVDETLAQLLVAEGFSQLEEVAYVELDELAGIEGFDEDLAQELQSRAAEALERREEAN 427

Query: 421 VTEEQLEGVEDSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDELTEIT---------- 470
            T  +  GVED L  +  + +++   L   G+KTLDDLADLA DEL              
Sbjct: 428 RTARRELGVEDDLATMPYLTEAMLVTLGKAGIKTLDDLADLATDELVAKKRPEPRRRGDG 487

Query: 471 -----------------GIDADRAKQLITNARSHWF 489
                            G+  ++  ++I  AR+HWF
Sbjct: 488 PAAPVRESDKGGVLGEYGLSDEQGNEIIMAARAHWF 523