Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 439 a.a., putative nitrogen utilization substance protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  234 bits (598), Expect = 3e-66
 Identities = 128/410 (31%), Positives = 239/410 (58%), Gaps = 13/410 (3%)

Query: 4   EILLLVDALAREK---NVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFR 60
           E + L+D  +  K   N+ +  +   LE +  S   K    + +  V+++ + G++E +R
Sbjct: 6   ETISLIDTFSEFKELKNIDRTTMVSVLEESFRSVIAKMFGTDENYDVIVNPDKGDFEIWR 65

Query: 61  RWQVVADETYVNEFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRI 120
             +VVADE   N  +++ L+EAQK D   E G+ + + +    FGR      +Q +  +I
Sbjct: 66  NREVVADEDLTNPNMQISLTEAQKIDASYEEGEEVTDEVIFAKFGRRAILNLRQTLASKI 125

Query: 121 RDAEREQILADFLERKEHIVSGTIKRM-ERGNAIIEAGKIEALLPRDQMIPKENLRVGDR 179
            + E++ I   ++++   I++  + ++ ++   +++    E LLP+ + IP +  R G+ 
Sbjct: 126 LELEKDSIYNKYIDKVGTIINAEVYQIWKKEMLLLDDEGNELLLPKTEQIPSDFYRKGET 185

Query: 180 VKAFLLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAV 239
            +A + R+D     P+IILSRT+P F+ +LF++EVPEI DGL+ IK  AR PG RAKIAV
Sbjct: 186 ARAVVARVDNKNNNPKIILSRTSPVFLQRLFEMEVPEINDGLITIKKIARIPGERAKIAV 245

Query: 240 KSNDPRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVV 299
           +S D R+DP+G CVG++G+R+  +  EL  E +D+++++ + + F+  AL+PA++SSI +
Sbjct: 246 ESYDDRIDPVGACVGVKGSRIHGIVRELRNENIDVINYTSNISLFIQRALSPAKISSIRL 305

Query: 300 DEEKHSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVL 359
           +EE+   +V +    +++AIG+GG N++LAS LT + I++  + +       E  A   +
Sbjct: 306 NEEEKKAEVFLKPEEVSLAIGKGGLNIKLASMLTEYTIDVFRELD-------ENVADEDI 358

Query: 360 FMEKL--DVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNEL 407
           ++++   ++D  V + +   G  T + V   P   ++E    +E+TV+E+
Sbjct: 359 YLDEFRDEIDGWVIDAIKAIGIDTAKAVLNAPREMLIEKTDLEEETVDEV 408