Pairwise Alignments

Query, 300 a.a., tRNA pseudouridine 55 synthase from Dechlorosoma suillum PS

Subject, 315 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  244 bits (624), Expect = 1e-69
 Identities = 138/310 (44%), Positives = 187/310 (60%), Gaps = 25/310 (8%)

Query: 5   RRTWKQVDGVLLLDKPLHLSSNDALQKARRFFSAAKAGHTGTLDPLATGLLPICFGEATK 64
           R   + +DG++LLDKP  +SSN ALQ+ +R ++A+KAGHTG LDPLATG+LP+C GEATK
Sbjct: 4   RTKGRNIDGIVLLDKPTGMSSNHALQRVKRIYNASKAGHTGALDPLATGMLPVCLGEATK 63

Query: 65  FSADLLDADKAYVADVRLGQTTATGDAEGEILQTRPVQVSAEQLAAVLPRFTGVIAQVPP 124
           FS  LLDADK Y+   +LGQ T T D++GE++  RP+  + E L A L  F G   QVP 
Sbjct: 64  FSQHLLDADKRYLVTAKLGQRTDTSDSDGEVVSERPLNFTQEALDAALDSFRGDTLQVPS 123

Query: 125 MYSALKRDGKPLYELARQGLEVEREAREVTILSLAASDFDGVNFRLHVDCSKGTYIRTLA 184
           M+SALK  G+PLY+ AR+G EV REAR +T+  L     +G    L + CSKGTYIRT+ 
Sbjct: 124 MFSALKYQGQPLYKYAREGKEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIRTII 183

Query: 185 EDIGEALGCGAHLTGLRRTRVGPLELDRAVSLAELEN-TEEADR---------GRYLLPV 234
           +D+GE LGCGAH+  LRRT V     +R V++  LE   E+A++            LLP+
Sbjct: 184 DDLGEKLGCGAHVIMLRRTAVAGYPYERMVTIEALEALLEQAEKEGVEPKTLLDPLLLPM 243

Query: 235 DALLRSLPEVLLEAESLQRFAHGNPVAT---------ELQSGKARVYGEGVLQGVGEVR- 284
           D  + + PEV +         +GNPV            +  G+AR +      GVG +  
Sbjct: 244 DTAVANFPEVNIPDAVAPYLMNGNPVRVAGVSSDSLLRITLGEARRF-----VGVGAIND 298

Query: 285 EGKLWPYRLL 294
           +G L P RL+
Sbjct: 299 DGLLAPKRLV 308