Pairwise Alignments

Query, 300 a.a., tRNA pseudouridine 55 synthase from Dechlorosoma suillum PS

Subject, 310 a.a., tRNA pseudouridine synthase B from Caulobacter crescentus NA1000

 Score =  205 bits (522), Expect = 9e-58
 Identities = 127/305 (41%), Positives = 168/305 (55%), Gaps = 14/305 (4%)

Query: 5   RRTWKQVDGVLLLDKPLHLSSNDALQKARRFFSAAKAGHTGTLDPLATGLLPICFGEATK 64
           R+    V G L LDKP  L+S  A+ + RR F+A K GH GTLDPLATG+LPI  GEATK
Sbjct: 4   RKKGDAVSGWLCLDKPYDLTSTTAVSRVRRAFNAQKGGHAGTLDPLATGILPIALGEATK 63

Query: 65  FSADLLDADKAYVADVRLGQTTATGDAEGEILQTRPVQVSAEQLAAVLPRFTGVIAQVPP 124
               L+DADKAY   +  G+ T T D EGE   T  V+ + EQ+ A LP F G + Q+PP
Sbjct: 64  TVPFLMDADKAYRFTIAWGRDTTTLDREGETTGTSDVRPTREQVEAALPAFIGEVDQIPP 123

Query: 125 MYSALKRDGKPLYELARQGLEVEREAREVTILSLAASDF-DGVNFRLHVDCSKGTYIRTL 183
            +SA+K DG+  Y+LAR G+E E   R+V+I  L   D  D  +  L ++C KGTY+R +
Sbjct: 124 NFSAIKVDGERAYDLARDGVEFELPTRKVSIFDLKVVDQPDADHVTLTMECGKGTYVRAV 183

Query: 184 AEDIGEALGCGAHLTGLRRTRVGPLELDRAVSLAELEN-TEEADRGRYLLPVDALLRSLP 242
             D+ +ALG   H+  LRRTRVG      A++L  LEN + EA     LLPV+  L  +P
Sbjct: 184 VRDLAKALGTCGHVADLRRTRVGGFSEASAIALETLENLSYEARLSEALLPVETALDDIP 243

Query: 243 EVLLEAESLQRFAHGNPVA----------TELQSGKARV--YGEGVLQGVGEVREGKLWP 290
            + +  E   R A G  +            EL  G   V       L  + E+R GKL P
Sbjct: 244 ALAVTDEDAFRLAQGRAIVLLPRQVETLKAELPPGDRTVSAMSGDRLVALCEMRAGKLNP 303

Query: 291 YRLLR 295
            R+ +
Sbjct: 304 VRVFQ 308