Pairwise Alignments

Query, 300 a.a., tRNA pseudouridine 55 synthase from Dechlorosoma suillum PS

Subject, 240 a.a., tRNA pseudouridine synthase B (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  151 bits (381), Expect = 2e-41
 Identities = 100/231 (43%), Positives = 125/231 (54%), Gaps = 20/231 (8%)

Query: 14  VLLLDKPLHLSSNDALQKARRFF------SAAKAGHTGTLDPLATGLLPICFGEATKFSA 67
           VL  +KPL  +S   +   R            K GH GTLDPLATG++ +C G+ATK   
Sbjct: 8   VLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKRIE 67

Query: 68  DLLDADKAYVADVRLGQTTATGDAEGEILQTRPV-QVSAEQLAAVLPRFTGVIAQVPPMY 126
           +     K YVA +RLG TT + D E EI  T P   ++ E +   L  F G I QVPP +
Sbjct: 68  EFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIEQVPPAF 127

Query: 127 SALKRDGKPLYELARQGLEVEREAREVTI----LSLAASDFDGVNFRLHVDCSKGTYIRT 182
           SA   DGK  YELAR+G EVE +A+++ I    L     D      R+ V CSKGTYIR 
Sbjct: 128 SACMVDGKRAYELARKGEEVELKAKQLVIDEIELLECRLDDPEPTIRIRVVCSKGTYIRA 187

Query: 183 LAEDIGEALGCGAHLTGLRRTRVGPLELDRA---------VSLAELENTEE 224
           LA DIGEAL  GAHLT L RTRVG + L+           +   E+EN E+
Sbjct: 188 LARDIGEALQSGAHLTELIRTRVGDVRLEDCLDPEHFKEWIDRQEIENDED 238