Pairwise Alignments

Query, 300 a.a., tRNA pseudouridine 55 synthase from Dechlorosoma suillum PS

Subject, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

 Score =  246 bits (629), Expect = 4e-70
 Identities = 139/302 (46%), Positives = 186/302 (61%), Gaps = 21/302 (6%)

Query: 11  VDGVLLLDKPLHLSSNDALQKARRFFSAAKAGHTGTLDPLATGLLPICFGEATKFSADLL 70
           +DG++LLDK   +SSN ALQ+ +RFF+A KAGHTG LDPLATG+LP+C GEATKFS  LL
Sbjct: 10  IDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGEATKFSQHLL 69

Query: 71  DADKAYVADVRLGQTTATGDAEGEILQTRPVQVSAEQLAAVLPRFTGVIAQVPPMYSALK 130
           D+DK Y+   +LGQ T T D++GE++QTRP++ +  QL + L  F G   QVP MYSALK
Sbjct: 70  DSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQVPSMYSALK 129

Query: 131 RDGKPLYELARQGLEVEREAREVTILSLAASDFDGVNFRLHVDCSKGTYIRTLAEDIGEA 190
             G+PLY+ AR+G+EV REAR +T+  L     +G    L + CSKGTYIRT+ +D+GE 
Sbjct: 130 YQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIRTIIDDLGEM 189

Query: 191 LGCGAHLTGLRRTRVGPLELDRAVSLAELE------NTEEADRG----RYLLPVDALLRS 240
           LGCGAH+  LRRT+V     D+ V+L +LE        E+ D        LLP+D  +  
Sbjct: 190 LGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLLLPMDTAVAD 249

Query: 241 LPEVLLEAESLQRFAHGNPVATELQSG-------KARVYGEGVLQGVGEV-REGKLWPYR 292
            PEV +   S      G  V     SG       +  +  E    G+GE+ ++G L P R
Sbjct: 250 FPEVNVPDASAAYLMQGQAVRV---SGLVADTLVRITLGTERRFVGIGEMNQDGLLAPKR 306

Query: 293 LL 294
           L+
Sbjct: 307 LV 308