Pairwise Alignments

Query, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

Subject, 1150 a.a., transcription-repair coupling factor from Pseudomonas syringae pv. syringae B728a

 Score = 1152 bits (2980), Expect = 0.0
 Identities = 612/1146 (53%), Positives = 794/1146 (69%), Gaps = 17/1146 (1%)

Query: 62   LAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFA 121
            L  L  +  + H   L G+  +LA+A   S A   KR   +LTA    A+RL +E+ +FA
Sbjct: 6    LPHLSAAAGKQHWGNLPGATLSLAIAEAASAA---KRFTLLLTADSQSAERLEQELKFFA 62

Query: 122  PDLKVRLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSY 181
            P L V   PDWETLPYD FSPH D++S+R+A+LY +   E  VL+VP TTA++RL P  +
Sbjct: 63   PTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPTKF 122

Query: 182  LAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRI 241
            L   +  L  G+KLD E  R++L  +GY +V  V   GE+++RG L+DLFPMGS LP+RI
Sbjct: 123  LLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPFRI 182

Query: 242  DLFDEEIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKS 301
            DLFD+EIETLRTFD DTQRS+  V  +RLLPAREFPL     TRF+ RFRE F+ D  +S
Sbjct: 183  DLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFRRS 242

Query: 302  GIYKDVSNGVPSAGIEYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSRY 361
             I++D+S+G+  AGIEY++PLFFEET+TLFDYLP+D  +     +  A ++FW D ++RY
Sbjct: 243  PIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRY 302

Query: 362  NMLAGDKARPLLPPAELFLSEEQFFVAAKDYAKLIL-------GTPAEGMPPLATAVPTV 414
                 D ARPLLPPAELFL  E  F   K++ +++        G   E  P  A ++P +
Sbjct: 303  EERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGAGRERFP--AQSLPDL 360

Query: 415  AVERRAEDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLG 474
            ++E +A  PL AL  F+    GR  L  AESAGRRE L +LL    L+P     +  F+ 
Sbjct: 361  SIEAKATQPLAALSTFLDDFPGR-VLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVD 419

Query: 475  GDAPLALGVAPLQSGFCLD--GLAIITETELYAGSP-NRRSRQNAQRRASMDNWLRDLTE 531
            G   LA+ +APL  G  L+   LA+I E+ L+      RR R+      + D  +++LTE
Sbjct: 420  GKDRLAITIAPLDEGLLLEQPALALIAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTE 479

Query: 532  LKVGDPVVHESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNE 591
            L+ G PVVH  HG+GRY+GL  L++     EFL L YA +AKLYVPV+ LH+I+RY+G++
Sbjct: 480  LREGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSD 539

Query: 592  PDAAPLHSLGSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADG 651
             + APLH LGS  W+KAK+KAAEQ RD AAELL +YA RAAR+G+AFA  + DY  F+ G
Sbjct: 540  DETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAG 599

Query: 652  FGFEETEDQATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLC 711
            F FEET DQ T I AV  DM + KPMDRLVCGDVGFGKTEVA+RAAF+AV GG+QVA+L 
Sbjct: 600  FPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILV 659

Query: 712  PTTLLCEQHYQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSK 771
            PTTLL +QHY +F+DRFADWPV +  +SRFK+AKE + A+ DL  GKIDIVIGTHKLL  
Sbjct: 660  PTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQD 719

Query: 772  EMKFDRLGLVMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVI 831
            ++K   LGLV+IDEEHRFGVRQKE LKALR+EVD+LTLTATPIPRTL M++ G+RD S+I
Sbjct: 720  DVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSII 779

Query: 832  ATAPQKRLAIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEA 891
            AT P +RL+++TFV + +   I+EA+LREL RGGQVY+LHN+V TI+     L  LVPEA
Sbjct: 780  ATPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEA 839

Query: 892  RIVVGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQL 951
            RI +GHGQM ERELE+VM DF  +R N+L+ +TIIETGID P ANTI+I RA+KFGLAQL
Sbjct: 840  RIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQL 899

Query: 952  HQLRGRVGRSHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAG 1011
            HQLRGRVGRSHHQAY+YLL    K +T  A++RLEAI + ++LGAGF LA +DLEIRGAG
Sbjct: 900  HQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQDLGAGFVLATNDLEIRGAG 959

Query: 1012 EVLGENQSGEMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAY 1071
            E+LG+ QSG++Q VGF LY EML RAV ++++G +P+L QPLG   EINL  PAL+P+AY
Sbjct: 960  ELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEAY 1019

Query: 1072 APDVHERLTLYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIV 1131
             PDVH RL LYKR++N   EE +  LQ E+IDRFG LP   + L+    L+L A  LGI 
Sbjct: 1020 LPDVHTRLILYKRIANAADEEALKDLQVEMIDRFGLLPEPTKNLVRITLLKLHAEQLGIR 1079

Query: 1132 KLDATASQLTVQFCPNPPIEPIRIIELIQKN-RHFKLAGQDKLAVVRHMPTLKERVDAVK 1190
            K+D       ++F    P++P+ +I+LIQ     +K  G      +  M   +ER + ++
Sbjct: 1080 KIDGGPQGGRIEFAAETPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIE 1139

Query: 1191 DLFRQL 1196
             L  +L
Sbjct: 1140 ALLERL 1145