Pairwise Alignments

Query, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas sp. BP01

 Score = 1145 bits (2961), Expect = 0.0
 Identities = 606/1128 (53%), Positives = 787/1128 (69%), Gaps = 12/1128 (1%)

Query: 77   LAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFAPDLKVRLLPDWETLP 136
            L G+A +LA+A   S A    R   +LTA    A RL +E+ +FAPDL V   PDWETLP
Sbjct: 21   LPGAALSLAIAEAASNAG---RFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLP 77

Query: 137  YDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSYLAAYTFFLKKGEKLD 196
            YD FSPH D++S+R+A+LY +      +L+VP TTA++RL P  +L   +  L  G+ +D
Sbjct: 78   YDLFSPHQDIISQRIASLYRLPELSHGILVVPVTTALHRLAPTRFLLGSSLVLDVGQTID 137

Query: 197  AEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRIDLFDEEIETLRTFDA 256
             EQ R++L  +GY  V  V   GE+++RG L+DLFPMGS LPYRIDLFD+EIETLRTFD 
Sbjct: 138  VEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDP 197

Query: 257  DTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKSGIYKDVSNGVPSAGI 316
            +TQRS+  V  +RLLPAREFP+     TRF+ RFRE F+ D  +S I++D+++G+  AGI
Sbjct: 198  ETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIPAGI 257

Query: 317  EYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSRYNMLAGDKARPLLPPA 376
            EY+LPLFFEET+TLFDYLP D  +     V  A + FW D + RY    GD +RPLLPPA
Sbjct: 258  EYYLPLFFEETSTLFDYLPADTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLSRPLLPPA 317

Query: 377  ELFLSEEQFFVAAKDYAKLILGT----PAEGMPPL-ATAVPTVAVERRAEDPLTALKQFI 431
            ELF+  E  F   K + ++++ +    P  G     A A+P +A+E +A  PL  L  F+
Sbjct: 318  ELFMPVEDCFARLKQWPRVVVSSEDIEPGAGRERFPARALPNLAIEAKANQPLAELANFL 377

Query: 432  AGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGDAPLALGVAPLQSGFC 491
                GR  L  AESAGRRE L +LL    L+P     +A F+ G   LA+ +APL  G  
Sbjct: 378  DQFPGR-VLFTAESAGRREVLLELLERLKLRPHTVDGWADFITGSERLAITIAPLDDGLL 436

Query: 492  LD--GLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTELKVGDPVVHESHGIGRYM 549
            LD  GLA++ E+ L+     +R R++ +   + D  +++LTEL+ G PVVH  HG+GRY+
Sbjct: 437  LDDPGLALVAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDHGVGRYL 496

Query: 550  GLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDAAPLHSLGSGQWEKAK 609
            GL  L++     EFL L YA  AKLYVPV+ LH+I+RY+G++   APLH LGS  W+KAK
Sbjct: 497  GLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSEAWQKAK 556

Query: 610  KKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGFEETEDQATAIAAVIE 669
            +KAAEQ RD AAELL +YA RAAR+G+AFA    DY  F+ GF FEET DQ TAI AV  
Sbjct: 557  RKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQTAIEAVRA 616

Query: 670  DMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTTLLCEQHYQTFKDRFA 729
            DM + KPMDRLVCGDVGFGKTEVA+RAAF+AV  G+QVAVL PTTLL +QHY +F+DRFA
Sbjct: 617  DMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFA 676

Query: 730  DWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMKFDRLGLVMIDEEHRF 789
            DWPV +  +SRFK+AKE A A  DL  GKIDI+IGTHKLL  +++F  LGL +IDEEHRF
Sbjct: 677  DWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEEHRF 736

Query: 790  GVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQKRLAIKTFVAKFS 849
            GVRQKE LKALR+EVD+LTLTATPIPRTL M++ G+RD S+IAT P +RL+++TFV + +
Sbjct: 737  GVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEQN 796

Query: 850  DGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIVVGHGQMNERELERVM 909
               ++EA+LREL RGGQVY+LHN+V TI+     L  LVPEARI +GHGQM ERELE+VM
Sbjct: 797  KSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVM 856

Query: 910  RDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQLRGRVGRSHHQAYSYL 969
             DF  +R N+L+ +TIIETGID P ANTI+I RA+KFGLAQLHQLRGRVGRSHHQAY+YL
Sbjct: 857  SDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYL 916

Query: 970  LVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVLGENQSGEMQEVGFNL 1029
            L    + ++  A++RLEAI + ++LGAGF LA +DLEIRGAGE+LGE QSG++Q VGF L
Sbjct: 917  LTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQAVGFTL 976

Query: 1030 YTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPDVHERLTLYKRLSNCE 1089
            Y EML RAV A+++G +P+L QPLG   EINL  PAL+P+ Y PDVH RL LYKR+++  
Sbjct: 977  YMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILYKRIASAA 1036

Query: 1090 TEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLDATASQLTVQFCPNPP 1149
             EE +  LQ E+IDRFG LP   + L+    L+L A  LGI K+DA  +   ++F    P
Sbjct: 1037 DEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLEFEAETP 1096

Query: 1150 IEPIRIIELIQ-KNRHFKLAGQDKLAVVRHMPTLKERVDAVKDLFRQL 1196
            ++P+ +I+LIQ + + +K  G  +   +  M    ER   ++ LF +L
Sbjct: 1097 VDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFKTLEALFERL 1144