Pairwise Alignments

Query, 867 a.a., DNA mismatch repair protein MutS from Dechlorosoma suillum PS

Subject, 862 a.a., DNA mismatch repair protein MutS from Vibrio cholerae E7946 ATCC 55056

 Score =  844 bits (2180), Expect = 0.0
 Identities = 464/870 (53%), Positives = 599/870 (68%), Gaps = 20/870 (2%)

Query: 4   KKNSDPSG----HTPMMQQYLALKSQHPGTLLFYRMGDFYELFFEDAEKAARLLDITLTT 59
           K N+ PS     HTPMMQQYL LK+++P  LLFYRMGDFYELF++DA++A+ LLDI+LT 
Sbjct: 3   KSNASPSESLSHHTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTK 62

Query: 60  RGQSAGLPIKMAGVPYHAVEQYLAKLVKMGESVVICEQVGDPATSKGPVERAVSRIVTPG 119
           RG SAG PI MAGVP+HAVE YLAKLV+MGESV ICEQ+GDPATSKGPVER V RIVTPG
Sbjct: 63  RGASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPATSKGPVERKVVRIVTPG 122

Query: 120 TLTDAALLDEKRDTLLMALTGGRGVWGLAWLNLASGEFRVSEVATEK-LAATLERIRPAE 178
           T+TD ALL E+ D L+ A+    G +G A +++ SG F++SE  TE+ +AA L+R  P E
Sbjct: 123 TVTDEALLSERVDNLIAAIYHHNGRFGYATMDITSGRFQLSEPQTEEEMAAELQRTSPRE 182

Query: 179 VLLPDSLVPEVNISAA---TTRRPDWHFDAEAAKRLLLEHFKVQSLTAFAAEDLRPALGA 235
           +L P+   P V++ A+     RRP W F+ + AK+ L + F  + L  F  E  +  L A
Sbjct: 183 LLFPEDFSP-VHLMASRQGNRRRPIWEFELDTAKQQLNQQFGTRDLVGFGVEQAKLGLCA 241

Query: 236 AGALLQYAQATQTQALPHVQGLMVERESAYLGLDAATRRNLELTETLRGEASPTLFSLLD 295
           AG L+QY + TQ  ALPH++ L  +R+   + LDAATRRNLELT  L G    TL  +LD
Sbjct: 242 AGCLIQYVKDTQRTALPHIRSLTWDRQDQSVILDAATRRNLELTHNLAGGTDNTLAEVLD 301

Query: 296 SCITAMGARYLRHALHHPRRDRAVPAARIDAIGALMADHLALAQYLRSGLKGFADVERIA 355
            C T MG+R L+  +H P RD A    R+DAI  L     AL   L   LK   D+ERI 
Sbjct: 302 HCATPMGSRMLKRWIHQPMRDNATLNQRLDAITELK--ETALYGELHPVLKQIGDIERIL 359

Query: 356 GRIALRNARPRDLSSLRDSLACLEELRRPLAGHPSPLLGELWGQLEAPVEAIELLLRAIA 415
            R+ALR+ARPRDL+ LR ++  L EL   ++    P L EL    E   E  +LL RAI 
Sbjct: 360 ARLALRSARPRDLARLRHAMQQLPELHSVMSELKQPHLTELRTHAEPMDELCDLLERAIK 419

Query: 416 QEPAAMVRDGGVMATGFDAELDELRALNDNCGAFLVDLEAREKERTGIATLKVEYNRVHG 475
           + P  ++RDGGV+A G+ AELDE R L +    FL  LEA E++R GI TLKV YN VHG
Sbjct: 420 ENPPVVIRDGGVIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHG 479

Query: 476 FYIEVTHANADKVPDDYRRRQTLKNAERYITPELKAFEDKALSAQDRALAREKWLYEQVL 535
           FYI+V+   +  VP  Y RRQTLKNAERYI  ELK  EDK L+++ RALA EK L+E++ 
Sbjct: 480 FYIQVSRGQSHLVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELF 539

Query: 536 DQLQPVVPQLQAVARALAQLDMLASFADTAVARNWCRPEFTDRPGLWLEAGRHPVVENEL 595
           D L P + QLQ +A ++AQLD+L + A+ A    +CRP      G+ ++ GRHPVVE   
Sbjct: 540 DLLMPHLEQLQQLAASVAQLDVLQNLAERAENLEYCRPTLVQEAGIHIQGGRHPVVE--- 596

Query: 596 QAQGDTFIPNDLDLGESEDAERRLLLITGPNMGGKSTYMRQTALIALLAHVGCYVPAKAA 655
           +   + FI N ++L    + +RR+L+ITGPNMGGKSTYMRQTALIAL+AH+G YVPA++A
Sbjct: 597 RVMNEPFIANPIEL----NPQRRMLIITGPNMGGKSTYMRQTALIALMAHIGSYVPAESA 652

Query: 656 RLGPMDQIFTRIGASDDLASGRSTFMVEMTESAAILHNATEQSLVLMDEVGRGTSTFDGM 715
            +GP+D+IFTRIGASDDLASGRSTFMVEMTE+A ILHNAT  SLVLMDE+GRGTST+DG+
Sbjct: 653 SIGPLDRIFTRIGASDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGL 712

Query: 716 ALAMAILRHLLEKNRSLTLFATHYFELTRLAHEYPALVNVHLDAVEHGDRIVFLHAVEEG 775
           +LA A    L ++  ++TLFATHYFELT L +  P L NVHLDAVEHGD I F+HAV+EG
Sbjct: 713 SLAWASAEWLAKEIGAMTLFATHYFELTELPNVLPHLANVHLDAVEHGDGIAFMHAVQEG 772

Query: 776 PANQSYGIQVAALAGIPSAVVRAAKKELRQLETRAAVDPLQPDLFAAVPAPDEGPEAPAH 835
            A++SYG+ VA LAG+P  V++ A+ +L+QLE  ++  P +    + V   ++    P  
Sbjct: 773 AASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSS-QPAETRKPSRVDIANQLSLIPEP 831

Query: 836 PALER-LGEIDPDSLSPREALDLLYELKTL 864
            A+E+ L  +DPD L+PR+ALD+LY+LK L
Sbjct: 832 SAVEQALAGVDPDQLTPRQALDMLYQLKKL 861