Pairwise Alignments

Query, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 927 a.a., two-component sensor histidine kinase BarA from Vibrio cholerae E7946 ATCC 55056

 Score =  332 bits (851), Expect = 9e-95
 Identities = 229/676 (33%), Positives = 356/676 (52%), Gaps = 36/676 (5%)

Query: 521  EMAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREYLRKIQHS 580
            E+  AK  A+ AA+ K++FLANMSHE+RTP+N VIG T   LKT L   Q +YL+ I+ S
Sbjct: 276  ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTNSQADYLQTIEKS 335

Query: 581  SQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEFVIEMADE 640
            + +LL IINDILDFSK EAGKL +E I F+ ++VLE+V +L +  A  KGLE  +++  +
Sbjct: 336  ANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPK 395

Query: 641  VPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVHDTGIGIK 700
            +PR +VGDPLRI QVL N   N++KFTERG + + V +   +   + L+F V DTGIGI 
Sbjct: 396  IPRGVVGDPLRIQQVLTNLVGNSIKFTERGNIDVSVEMRALRDDVIDLQFMVRDTGIGIS 455

Query: 701  AGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGSTFWFTAR 760
              +   LF +F QAD+S +R+YGGTGLGLVI ++L   MGG++   S   +GSTFWFT R
Sbjct: 456  ERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLR 515

Query: 761  LGRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQ 820
            L  +    +       L  R LL+++ +  A  +V   L     +V+   +    + E Q
Sbjct: 516  LHTTELPLNDGYNADSLNHRHLLLIEPNMQAAAIVQQTLVQSGLEVTYRSA----IPEEQ 571

Query: 821  RASAAGEPYDIVFLDWQMPEMDGLATAREI---RRLELPQPPLVLMITAYGRDELARSAG 877
                    YD V L+   P  +   T  E+   R L +       +I      ELA  A 
Sbjct: 572  HV------YDYVLLN-LAPSKETNPTLVELWVQRALAMTHN----VIVGVPSTELA-LAD 619

Query: 878  ESGLQGIEEILIKPVSPSQLFNTVMRILDHEDGPHSAADPEALPDLAPLAGLRVLLVEDN 937
            +   +   + + KP+S  +L  T   +   +    + + P+   D  PL    V+ V+DN
Sbjct: 620  QLMQRYPVKCISKPLSRKKLLQT---LAAQQPQLANTSLPKPQADKLPLC---VMAVDDN 673

Query: 938  QLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDGIAATREIRRQ 997
              N ++ +  L      V     G  A+E+ + +++D+ILMD+QMP MDG+ A + I++ 
Sbjct: 674  PANLKLITALLQERVEYVVSCTSGQEAIEQAQSRQFDIILMDIQMPHMDGVTACKAIKQL 733

Query: 998  FPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLKWLAPGAPLVAPQA 1057
                  P++A+TA+AM  +R+R L AGM+D++ KP++   L   L+ W        +P  
Sbjct: 734  KGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIEEHILQQVLVHW--------SPHT 785

Query: 1058 AAPLPGTVTPTPPVAAPAKA-DRQPFAGIPGLDATLGLHQALDREGLYLRLMDKFVSGQR 1116
             +     VTP    A  + A    P A    +D  + L Q+ ++E L   ++   V   R
Sbjct: 786  RSKQVAKVTPPDGAAVISNALPSSPPAEEAIIDWPVALRQSANKEDLAKEMLGMLVDYLR 845

Query: 1117 DAPQRLARAIDAGDWVGAE--REAHTLKGVSAQIGAMPLRDLAEGLEHAIRQRDPPDLLQ 1174
            +    +  A++  ++  ++     H L G  +  G   LR +   LE A+R     D L+
Sbjct: 846  EVETVVNTALEDEEYPASDLLHHIHKLHGSCSYSGVPRLRKICASLEQALRNGASIDELE 905

Query: 1175 DLLGKIADSLPPLVDA 1190
              L ++ D +  +++A
Sbjct: 906  PELFELQDEMAKVLEA 921