Pairwise Alignments

Query, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

 Score =  234 bits (596), Expect = 3e-65
 Identities = 139/377 (36%), Positives = 210/377 (55%), Gaps = 16/377 (4%)

Query: 526 KALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREYLRKIQHSSQHLL 585
           K  A+A+ +AK+ FLA +SHEIRTPMN V+G   + LK +L  +QR++L  +  S +H++
Sbjct: 347 KVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMM 406

Query: 586 GIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEFVIEMADEVPRHL 645
            ++N+ILD+SK E GK  ++   F L+ ++  + S+ S     KGL+F +       R  
Sbjct: 407 SLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWY 466

Query: 646 VGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVHDTGIGIKAGELP 705
            GD  R+ Q++ N  SNAVKFTE G VAI +  EE   +E  L   V DTGIGI    L 
Sbjct: 467 YGDKARLRQIIFNLLSNAVKFTEAGFVAIGLS-EESCDEENYLIIKVQDTGIGIAQESLG 525

Query: 706 TLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGSTFWFTARLGRSS 765
            +F  F+QA+S TTR++GGTGLGL I K++AELM G V  +SE G+GS F    +L  + 
Sbjct: 526 RIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITE 585

Query: 766 NARHRAPPR-----PDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGNRCLAELQ 820
                  P      P L   R+L+V+D+     ++   +R+  F+      G + +  LQ
Sbjct: 586 PVTEDVKPTKAKTYPGL---RVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQ 642

Query: 821 RASAAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELARSAGESG 880
            +S     +D+V +D  MP  DG+   REIR+L LPQ  ++L       D    +  +  
Sbjct: 643 ESS-----FDLVLMDNHMPLKDGIQATREIRQLPLPQAKILLF--GCTADVFKDTRDKML 695

Query: 881 LQGIEEILIKPVSPSQL 897
             G ++I+ KP++  +L
Sbjct: 696 SAGADDIIAKPIAEHEL 712



 Score = 82.8 bits (203), Expect = 1e-19
 Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 1/112 (0%)

Query: 928  GLRVLLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDG 987
            GLRVL+VEDN+ N  +   F+           DG  A+  +++  +D++LMD  MP+ DG
Sbjct: 601  GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSFDLVLMDNHMPLKDG 660

Query: 988  IAATREIRR-QFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDL 1038
            I ATREIR+   P A + +   TA+  +  R++ L+AG +D IAKP+   +L
Sbjct: 661  IQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHEL 712