Pairwise Alignments

Query, 650 a.a., DNA helicase, Rad3 from Dechlorosoma suillum PS

Subject, 691 a.a., ATP-dependent DNA helicase DinG from Vibrio cholerae E7946 ATCC 55056

 Score =  207 bits (526), Expect = 2e-57
 Identities = 197/670 (29%), Positives = 295/670 (44%), Gaps = 88/670 (13%)

Query: 36  EMAEKIAAAI-ADNRMLVAEAGTGTGKTYAYLVP----ALLSGGKVIVSTGTKTLQDQLF 90
           EMA+ +  A     +MLVAEAGTG GK+ +YL+     A+++  KV++ST T  LQ+QL 
Sbjct: 36  EMAKTLCGAYHKSTQMLVAEAGTGIGKSLSYLMAVIPVAVVNKRKVVISTATVALQEQLL 95

Query: 91  NKDIPTVRAALKAPVKVALLKGRANYVCPYHLDRS---------LLDGRFQNREDVAYIQ 141
           NKD+P  R          L KGR  Y C   L  +         L + + +  E     +
Sbjct: 96  NKDLPLYRRISDQNFSFILAKGRQRYCCSERLAAACGIDDGQIALFESKPKPHETELLAE 155

Query: 142 KIARFAKETRSGDKAECLDVPENATAWIMATSTRENCLGQECPHHKECFVLQARKEALSA 201
                ++    GD+ +    P +   W +  S + +C G    H + C   +AR E   A
Sbjct: 156 LHTALSQGKWDGDR-DGWPSPISDELWSVIVSDKHSCNGSFSVH-RHCPFQKARSELDKA 213

Query: 202 DVVVVNHHLFFADVMLKDEGMAELLPACNAVI--FDEAHQLPETA--------------S 245
           DV++ NH L  AD    D G   +LPA    I  FDEAH LP  A              S
Sbjct: 214 DVIIANHSLVMADA---DLGGGVILPAPEETIYVFDEAHHLPTVAREHASAAATLKGAAS 270

Query: 246 LFFGDSFSTSQVLDLARDARSEGLAS-ARDCLDLQEATRIVDKAAKDLRLTVAVEPA-RY 303
                + S S+   L  + R+E  A  AR  +     T  +++  K       VE   R+
Sbjct: 271 WLEKLNQSLSKFTALGDEKRAERFAEEARTAIQYLIPT--LNQLPKQFMAEQFVEGIYRF 328

Query: 304 AWGQL-------------------EGNAQFLDGLANLEKELELLNAILENQ-------AE 337
             G+L                   +  ++  D +A   KE EL   I E          +
Sbjct: 329 EHGELPQWLADESQALSKSSQKAMQSVSKVADLIAEKVKEGELATRIAEPALGELGFYVQ 388

Query: 338 RSEGLENCW----RRNGELLQRLIQWRQEQPGVVRWGEAFNHSLQLNATPLDVARLFRKQ 393
           R E L   W    + N +    L +W +  P   R G+       ++ +PL++     +Q
Sbjct: 389 RLENLTQVWQLMAKPNKDKGAPLARWLEVSPE--REGDYL-----VSVSPLEIGWQLDQQ 441

Query: 394 LDGHPRAWIFTSATLAVQADFSHYCNELGLWD-----AESARWESPFDYGQQAVLYAPRD 448
           L       I  SATL     F  +C + G+ D      +     SPFDY  Q  L  P+ 
Sbjct: 442 LWSRCVGAILVSATLRALNSFGFFCRQAGISDKAEDGVQFLALASPFDYPTQGELLIPKM 501

Query: 449 IPDPNLPGFTEAVVEAAWPALKACGGGAFFLCTSLRAMRRTHELLAAKLEDEGLEMPLLL 508
             +P   G+T  + +     L+A       L  S   MR   E L  +    G    L +
Sbjct: 502 EMEPQAEGYTAYLAKKVLCYLQADKAN-LVLFASYWQMREVAESLKVEFTKRG--WALQV 558

Query: 509 QGEGSKTELLERFRRL----GNAVLVGSQSFWEGVDVRGEALSLVVIDKLPFAPPDDPVL 564
           QGE S++E+L + ++L      +VL G+ SF EG+D+ GE L  ++I K+PFA P  PV 
Sbjct: 559 QGEKSRSEILNKHKKLIEKQKTSVLFGTGSFSEGLDLPGELLENLIITKIPFAVPTSPVE 618

Query: 565 KARVEQMEKEGRSAFMEYQLPRAVINVKQGAGRLIRDETDRGVLMICDPRLITKPYGKRV 624
           +A  E +++ G + FM+  +P A   + Q  GRL+R E D G ++I D R+++K YGK +
Sbjct: 619 QAHAEYIQELGGNPFMQITVPEASKKLIQSVGRLLRKERDSGRVVILDRRVVSKRYGKAL 678

Query: 625 WRSLPPMKRT 634
             +LPP KRT
Sbjct: 679 LDALPPFKRT 688